Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01334 ATGAGAACAACACTAAGCATCTTCTTCAACACCAAAACTGCGCACGCCCCGCCATTGTCGTATAAGCTTAAGCCCTATCTTGTTTCCGCCATTGTTGAAACTGTGCGCGCAAGGAACCCTAAATCGTTTAAGGTTTGGAATGCGGTTACTCAACGGACTCAGTTTGTACATTGCAGTTTGCTACAATGGCTTGACTTCAGCAACATCGATACTATTACAGCCTTGAAATTGTTGGGGACTTTCCTTTACCTCTTCTGCACTAGTACTGGCGTTGGCATACTAGTTGGCCTTTTGAGTGCTTATATTATTAAAACACTTTACCTTGGAAGGCATTCTACTGATCGTGAAGTTGCACTTATGATGTTGATGGCATATTTGTCATATATCATTGCTGAGGCCAGAATTTGA 408 0.4216 MRTTLSIFFNTKTAHAPPLSYKLKPYLVSAIVETVRARNPKSFKVWNAVTQRTQFVHCSLLQWLDFSNIDTITALKLLGTFLYLFCTSTGVGILVGLLSAYIIKTLYLGRHSTDREVALMMLMAYLSYIIAEARI 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01334 135 PANTHER SODIUM/HYDROGEN EXCHANGER 51 132 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cca11g01334 135 PANTHER SODIUM/HYDROGEN EXCHANGER 51 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01334 Cca-Chr11 34466216 34468424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01334 49 132 Antiporters AT3G06370 55.952 2.41e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01334 K14724 - ccaj:109808094 125.176