Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01333 ATGAATCCTCAAGGTGACGCAACCAGAGAGAACAATTATATTAACAATGAAAATGACGTGAGTCATCCTGAACCCGAATCATCGGAGGGGCTCCTTACTTTATTTCCCCTCACTCCTGAAAGGTTGAATGAAAGGTTTCATCAGCCACAAAGGGATCTCCCTGAAGAAGGTGCATTGGGATCAAACAGAACTAAGAGAAGCTCCACTGAGCATGGAGAAAGTTCAAGCATGGGTGAACAGGCCAAACGACGTGTCACTGAGTCGCATGAAAGTTCCTCATCACCACCATTACCGGTTGAGAGGCAGTTACACGAGTTCTTTAGGGAAACTGAATCTGCAGACATTCAACCTCAACTAATTCAAGGTTGTAATGGTGTCATGCAACATGTTCCTCCATCCATAAGTACAAATGCTCTacctcaacctcaacaacctcaacctcaacctcaacctcaacctcaaACTATTCAAGCCGTGATGGTACCACTACCCTTACAATTCAGATACTTTAATGGAGCTATTTTGTTTGATCCTCAAGTTGCAACGGGGAATCATTCTCATGAGAACGGGTCATTTGTGAATGATCATAGTAGTAGTGTTCATAATGCCTTTTCACATCAACCTTTGATTCAGCAAGCTGGCCCTTCAAATTCGGGTCCTTCACAACAGGTGATAGGACCTGTTGTTCAAATTCAACCTCTTGTCAGTTATCAACCTTTTACGTCTCTGGAATGGCTGGAACTTGACCATTCCCCTTCGTTACATGCGTTTATGATGGAGCTGCTGAATGAAGATTTTTCAGAACTAGATGCGGGATTGAGCGAAAACGTAATAATGCAGAACATTAAGCGTGAACGTTTCACGTTTGTCATTGATGAAGAGAATCCCGAAGACAAAGAAAAATGCACCATTTGTCTGGAGGATTTTGAAGACGGAGAAGAAATTGCGAAGATGGATTTATGTATTCACAAGTTTCACGTTCAATGCATCAAACAATGGCTCATGGAAAGGAACGTTTGCCCAATCTGCAAACGCACTGCTTTGACTGTGAACAATGATCAAAATGAAGGTTGA 1074 0.4041 MNPQGDATRENNYINNENDVSHPEPESSEGLLTLFPLTPERLNERFHQPQRDLPEEGALGSNRTKRSSTEHGESSSMGEQAKRRVTESHESSSSPPLPVERQLHEFFRETESADIQPQLIQGCNGVMQHVPPSISTNALPQPQQPQPQPQPQPQTIQAVMVPLPLQFRYFNGAILFDPQVATGNHSHENGSFVNDHSSSVHNAFSHQPLIQQAGPSNSGPSQQVIGPVVQIQPLVSYQPFTSLEWLELDHSPSLHAFMMELLNEDFSELDAGLSENVIMQNIKRERFTFVIDEENPEDKEKCTICLEDFEDGEEIAKMDLCIHKFHVQCIKQWLMERNVCPICKRTALTVNNDQNEG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01333 357 MobiDBLite consensus disorder prediction 1 99 - -
Cca11g01333 357 ProSiteProfiles Zinc finger RING-type profile. 302 344 IPR001841 -
Cca11g01333 357 Pfam Ring finger domain 301 344 IPR001841 -
Cca11g01333 357 SMART ring_2 302 343 IPR001841 -
Cca11g01333 357 MobiDBLite consensus disorder prediction 129 153 - -
Cca11g01333 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 261 348 IPR045191 GO:0061630
Cca11g01333 357 SUPERFAMILY RING/U-box 286 350 - -
Cca11g01333 357 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g01333 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 261 348 - -
Cca11g01333 357 MobiDBLite consensus disorder prediction 66 89 - -
Cca11g01333 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 348 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01333 Cca-Chr11 34452818 34455093 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01333 272 354 C3H Transcription Factor Family AT2G17450 40.230 7.42e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01333 - K17821 ccaj:109791527 692.96