Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01331 ATGGATCGCGCTGCAATGTTTGAGGAATGGATTGACCTTGTCAATTCCCCTTTGTTACAAGCGCTTTTGACAGGGGAGAGTCAATTTGATATTTTACAACCACAAGAGGCACTGCATGAAGAAGTGATTATGCAACATATCAAGCGTGAAAATTTCACGTTTGTAAATGAAGAAGCGAGTCCAAAGGATAAAGAAAACTGCGTCATTTGTCTAGAGAGTTATGAAGATGGAGACGTGATCGGGAAACTGGATTTATGTGTTCACAAGTTTCACGTTCAATGCATCAAACAATGGCTCATGGAAAGGAATGTATGCCCAATATGCAAAAGAATAGCTTTGGATGCGAACAATAATGTGGATAGTGAAGATAATTGA 375 0.392 MDRAAMFEEWIDLVNSPLLQALLTGESQFDILQPQEALHEEVIMQHIKRENFTFVNEEASPKDKENCVICLESYEDGDVIGKLDLCVHKFHVQCIKQWLMERNVCPICKRIALDANNNVDSEDN 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01331 124 Pfam Ring finger domain 66 109 IPR001841 -
Cca11g01331 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 113 IPR013083 -
Cca11g01331 124 SUPERFAMILY RING/U-box 66 113 - -
Cca11g01331 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 36 113 - -
Cca11g01331 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 36 113 IPR045191 GO:0061630
Cca11g01331 124 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Cca11g01331 124 SMART ring_2 67 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01331 Cca-Chr11 34372852 34374594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01331 8 113 C3H Transcription Factor Family AT2G15530 39.286 8.55e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01331 - K17821 ccaj:109791527 146.362