Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01330 ATGGATAGGCTCTGTAGCTCCAAAACTGCACAACAATATGCACTACGAGATGGGATCTCAAAGGGTTCTACTTCTTTGTCTGTGGAGGGTGAAGCGTTGGTGGAAGAGGTTACAGTTCCAACAAAGTGGGTTCGTTCTAGGAGTTCCTCCAAAAGGAGCAGAGCTGCGGAAGTTCATAACCTATTTGAAAAGCGGAGGAGGAGTAGGATCAATGAGAAATTAAAGGCTTTGCAAAATCTAATTCCCAGTTCTAACAAGACTGATAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATAGGCAGGGACTACATCTTACAGCACCCGCACTTAAATCCAAACATATTGGCCAAACATTTTGGCCAACGCAAGACGGCCATTCAACAAGTTGTTACAACTCCAAGTTTTGAAGTCAAAACAATCTTGGCTGGTGAAGTTAGGAATAGAGGTTGGATGATAGATATTTGGAATCATCTCAAAGAGAACAAAGTGGAAGCCAAAAAAGATCAAGATTAA 543 0.4162 MDRLCSSKTAQQYALRDGISKGSTSLSVEGEALVEEVTVPTKWVRSRSSSKRSRAAEVHNLFEKRRRSRINEKLKALQNLIPSSNKTDKASMLDEAIEYLKQLQLQVQIGRDYILQHPHLNPNILAKHFGQRKTAIQQVVTTPSFEVKTILAGEVRNRGWMIDIWNHLKENKVEAKKDQD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01330 180 PANTHER TRANSCRIPTION FACTOR SPATULA 29 126 - -
Cca11g01330 180 SMART finulus 60 109 IPR011598 GO:0046983
Cca11g01330 180 CDD bHLH_AtPIF_like 55 109 - -
Cca11g01330 180 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 29 126 IPR031066 -
Cca11g01330 180 Gene3D - 49 111 IPR036638 GO:0046983
Cca11g01330 180 Pfam Helix-loop-helix DNA-binding domain 58 104 IPR011598 GO:0046983
Cca11g01330 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 118 IPR036638 GO:0046983
Cca11g01330 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01330 Cca-Chr11 34336890 34343985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01330 30 118 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 73.626 5.63e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g01330 HLH 5.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01330 - - pvu:PHAVU_003G242900g 148.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01472 06 29642223 29645642 Cca11g01330 11 34336890 34343985 PCT