Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01325 ATGGACTGGGTCCGGGGAGACGCCGTCGGACGAGGAAGCTTCGCCACCGTTAGTTTAGCCATCCCCAAGACCCACCCCGGTCGGTTTCCGTTAACCGCCGTCAAGTCCTCCGAAGCTAACACCTCGCGCTGGCTCAAGAACGAGAAACACGTGCTCGACCGCCTAGGCTCGTGTCCCAGGATCGTTCGTTGCTTCGGTCATGACTACACTTTGGAGAATGGCGTCGAGTTTTATAACCTCTTCCTCGAATACGCCGCCGCCGGGACCCTCGCCGACGAAGTCAAACGCCGCGGTGGCCGGATTGCCGAACCTGCGGTTCGACACCACGCGAGGTCCATCGTGGAGGGGTTAAACCACGTGCATCAAAAGGGGTTCGTGCACTGCGACGTAAAGCTGCAAAACATCCTCGTATTCGAGGACGGGGAAATCAAGATTGCGGATTTCGGTCTGGCGAAGGAGGCAGGGGAGGAACAGAGTAGAAGTGAATGCAGGGGGACTCCGATGTTTATGTCGCCGGAGCAAGTGATCGCCGGCGAGTGCGGCCCGGCGGCGGATATTTGGGCCCTCGGGTGCGCCGTCGTGGAGATGGTTACCGGGAAACCGGCGTGGCAGGTGGAGAAAGGGTCCTCGATGTGGTCGTTGTTGCTTCGTATTGGAGCGGGCGAAGAGGTTCCCGGGATACCGGAAAATTTGTCTGACGAAGGAAAGGATTTTATCGGAAAGTGTTTTATTAAGGATCCTAGAAAGAGGTGGAGTGCGGAAATGCTTTTGGCACACCCTTTTGTTTCGGAAGACACTGTTTCGTTTAAGCACTTTCACGAGTCGCCCCGAAGTCACTTCGAGTTCCCCGATTGGGTTTCTAGTGCCACGGAATCTCAATCGCCGTGGAATTTTCATGAGTCGTGTTTGGATAGTTTGTGTTCGCCGGAGAATCGCCTCCGCCGGCTCGTGACGGTTCAGACGCCGGCGGGTTGGTCCGAATCGGATGGATGGAGTAGTGTTAGGTGA 1008 0.5655 MDWVRGDAVGRGSFATVSLAIPKTHPGRFPLTAVKSSEANTSRWLKNEKHVLDRLGSCPRIVRCFGHDYTLENGVEFYNLFLEYAAAGTLADEVKRRGGRIAEPAVRHHARSIVEGLNHVHQKGFVHCDVKLQNILVFEDGEIKIADFGLAKEAGEEQSRSECRGTPMFMSPEQVIAGECGPAADIWALGCAVVEMVTGKPAWQVEKGSSMWSLLLRIGAGEEVPGIPENLSDEGKDFIGKCFIKDPRKRWSAEMLLAHPFVSEDTVSFKHFHESPRSHFEFPDWVSSATESQSPWNFHESCLDSLCSPENRLRRLVTVQTPAGWSESDGWSSVR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01325 335 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Cca11g01325 335 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 296 - -
Cca11g01325 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cca11g01325 335 SUPERFAMILY Protein kinase-like (PK-like) 3 293 IPR011009 -
Cca11g01325 335 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 296 - -
Cca11g01325 335 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Cca11g01325 335 CDD STKc_MAPKKK 2 262 - -
Cca11g01325 335 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01325 335 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01325 335 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01325 Cca-Chr11 34255550 34257246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01325 1 335 MAP Kinase Kinase Kinase AT5G67080 48.876 1.17e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca11g01325 Pkinase 9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01325 - - gmx:100798607 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01467 06 29595386 29596766 Cca11g01325 11 34255550 34257246 PCT