Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01323 ATGGACGTGGACATAGTGAAGACTTCCGCGTGTGACACCACCAACATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGATTTCTGCGACCCTTTTTATACCCTTTACCAAGAAACCGACCTATTATCAAGTGGAAGCGTTTCCACCGTATTCAACAGTATAACTCCACCGACTCTCACCGATCCACCACAATCAAATGTTAACTTCTTcaacaacaacaacaacaacaacgttatccaacaacaacacatgacgacaacaCTACCGTCGCATGACACTTTGGAGAAAAAGAACTCGATGGCGGCGATGAGGGAAATGATATTCCGAATAGCGGTGATGCAACCGATTCACATAGACCCGGAATCGATTAAGCCACCAAAGAGAAGGAACGTGAAGATTTCGAAGGATCCACAGAGCGTGGCTGCGAGGCACAGAAGAGAAAGGATAAGCGAGAGGATAAGGATTCTTCAGAGATTAGTCCCTGGTGGCACGAAAATGGACACGGCTTCGATGTTGGATGAGGCCATTCACTACGTGAAGTTCTTGAAGAAACAGGGTTGTCAACCTTGTCAAATGTTGGGTTCCACTTCTAAGCAATTGCTCAGTTGA 618 0.4223 MDVDIVKTSACDTTNMDMMAMMMQMEKFPDFCDPFYTLYQETDLLSSGSVSTVFNSITPPTLTDPPQSNVNFFNNNNNNNVIQQQHMTTTLPSHDTLEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQGCQPCQMLGSTSKQLLS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01323 205 Pfam Helix-loop-helix DNA-binding domain 145 185 IPR011598 GO:0046983
Cca11g01323 205 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 189 IPR045843 GO:0003700|GO:0006355
Cca11g01323 205 Gene3D - 131 192 IPR036638 GO:0046983
Cca11g01323 205 SMART finulus 142 191 IPR011598 GO:0046983
Cca11g01323 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Cca11g01323 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 188 IPR036638 GO:0046983
Cca11g01323 205 PANTHER TRANSCRIPTION FACTOR HEC2 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01323 Cca-Chr11 34170208 34170957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01323 12 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.044 1.55e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g01323 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01323 - - gmx:100800816 238.039