Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01309 ATGTCgcagcgttcgacgccagcgccgtttttgacgaaaacgtatcagctggtggacgattccgccaccgacgacgtcgtttcctggagccaaactggcaacacttttgtcgtttggaaacacgccgatttcgctaaggatttgcttcctaagtacttcaagcacaacaacttctccagcttcgttcgccagctcaacacctatGGATTCCGAAAGATAGTTCCGGACAAATGGGAATTCGCGAACGAGTATTTCAAGCGAGGACAGAAGGAGCTCCTCGTCGAAATCAAGCGGCGGAAGACGGTGGTGCAAGCGCCGGCGGCCGGGAAATCCGTGGGCGGCGGGGGAAACATCTCGGCGTCTCACTCGGGCGGCGGCGACGACATGGGGTCTACGTCGACGGGGTCGGTGGAGGCGACGCCTCAGGGCGCGGACTTATCGGGCGAGAACGAGAAATTGAAGAAAGACAACGAGAAATTGAGCAGCGAGCTGGCGCGCGCGAAGAAGCAGTGCGAGGAACTCGTGAGTTTTCTGAGGGAGTCTCTGAAGGTGTGTCCCGATGTGATAAACCGCATCATTCGTCAAGGAACGTGTGGGTCCGGCGACGATGCGGTGCGTTTTGATGCCAATGATGATGACGAAAATGCGGTAGGTGAATGTGAAGAACCCAGCGGTGGAGAAAGTTTGAAACTGTTTGGTGTTTGGTTGAAGGGTCAGGATGGGAAGGACAATGAGAATTTGAAGATCGCTAGCGGTAACTGCCGCAAGAGAGGGCCTCAAGACCCTATTGCTCGCACCGCCAAGGAATTGAAGACCCTTGTTTAG 825 0.4218 MSQRSTPAPFLTKTYQLVDDSATDDVVSWSQTGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLVEIKRRKTVVQAPAAGKSVGGGGNISASHSGGGDDMGSTSTGSVEATPQGADLSGENEKLKKDNEKLSSELARAKKQCEELVSFLRESLKVCPDVINRIIRQGTCGSGDDAVRFDANDDDENAVGECEEPSGGESLKLFGVWLKGQDGKDNENLKIASGNCRKRGPQDPIARTAKELKTLV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01309 274 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 253 - -
Cca11g01309 274 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g01309 274 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g01309 274 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g01309 274 Gene3D - 2 101 IPR036388 -
Cca11g01309 274 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Cca11g01309 274 MobiDBLite consensus disorder prediction 124 143 - -
Cca11g01309 274 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g01309 274 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 253 IPR027725 -
Cca11g01309 274 Coils Coil 143 177 - -
Cca11g01309 274 Gene3D - 138 180 - -
Cca11g01309 274 MobiDBLite consensus disorder prediction 106 158 - -
Cca11g01309 274 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g01309 274 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01309 Cca-Chr11 33647366 33651225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01309 2 253 HSF AT4G36990 56.506 2.85e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca11g01309 HSF_DNA-bind 9.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01309 K09419 - gmx:100801638 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01456 06 29460292 29462340 Cca11g01309 11 33647366 33651225 PCT