Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01302 ATGGTGTTGATTGATGAAAAGAACCGTAACCGTGTGATTAAAAAGGACACGATGGAGCTTCCACACAATGATCATGCAGTAACTGTGGCATATTATGGAGAGGAGTTTCACCACGATGTACCTCTAGCCCATTTCTCTAGAATGACTCCTTTAAACACGGATAGACAAAACAAGGCGACGACAGAGAATAAATACAAGCTCTTAAACAGTTCGATAAAGCAAGCTACACCTAGCGAGGCTCAAAAGTTTGCAAGTTCTATTAAGGCTGCAACTGAAGGAACATCATCTCGTGGTGAGGTCATGTCATCTGCTGTTCTTCAAGCAGAGGAGATCCAATCAAATTTGCAGTCAGAATTCCCTAGTTTTGTGAAATCTTTAGTTAGATCACATGTTGCAAGTTGTTTTTGGATGGGGTTGCCTGTGTCATTCTGTAAAAAACACTTACCAGATAAGGATACAACAATAATTTTGGAAGATGAATCTGGTAAAGAATATAATACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACAGTTTTCAGCTGTGCACAAATTGCAAGAGGGTGATGTGGTAGTCTTCCAATTAATTCAACCTACCAAATTTAAGGTTTATATAATACGAGCTAATAATACGAGGGAACTAGATGGGGCCTTTCTAAGTCTTGACAATTGCATAAAACAAAAAATGGGAGGCAAAGGTAATACAGATATTGATGTTGTGACATGTAATGCCTCAAAGAGAAAACATGGAAAATCTATTCCACTAGACGTCCGAAAGAAAAAGAAGAGTAGCATGTCAAGAATGAGACCTAAGGCTAGGCCACCAGTCGAGCAATCTGAAAACGATAGTGACGAAGCTCTCTCAGAAGTTATGGAGGGCTATAAAATGCTTGAATTCAAAGATGTGAAAGGTTTTGAAAATTTCAGCATCATAGTTGATGGAATGCCAATAGACGTCGAACTCTCCACTGAGGTTCGAAACAAGTACTATAACCTATGTTGTAGTCAACATGCTTTTCTACACGACAATCTCATCAAGGGCATGAACTACAAGTTGATTGCTGGAATTATATCTGAAACTGTCAACATTGCTGATGCCATAAAAGTTAGTGTGATATGTACTCCACGTTTTGAATTCACTAACTGGGACAAAACTTTGCTTGCCTTCGAGCATTTGGGCATGAATGTTGAGTTTCTAAGAGTTCGATTACGCCGTCTTGTAAGCATTGCTTATGAGACTAATGATGCCTTAGAAGCGAGAAAATACTTGGCATGTAGAAATGAATATACTCGTGCAGATGATGAAATAAAGAATATGGAAGCCAAACTCGAAGAATTAAAGGGAGCATGTTACGAGTTTGGTGCCTATCTTGAGAGTTTGAAGTGCAAAGCCGAAAGCTATCATGTGAAGTTTAAAAAAGAGGTGGCTACTCCGTGGTGA 1452 0.3905 MVLIDEKNRNRVIKKDTMELPHNDHAVTVAYYGEEFHHDVPLAHFSRMTPLNTDRQNKATTENKYKLLNSSIKQATPSEAQKFASSIKAATEGTSSRGEVMSSAVLQAEEIQSNLQSEFPSFVKSLVRSHVASCFWMGLPVSFCKKHLPDKDTTIILEDESGKEYNTKYIACKTGLSAGWRQFSAVHKLQEGDVVVFQLIQPTKFKVYIIRANNTRELDGAFLSLDNCIKQKMGGKGNTDIDVVTCNASKRKHGKSIPLDVRKKKKSSMSRMRPKARPPVEQSENDSDEALSEVMEGYKMLEFKDVKGFENFSIIVDGMPIDVELSTEVRNKYYNLCCSQHAFLHDNLIKGMNYKLIAGIISETVNIADAIKVSVICTPRFEFTNWDKTLLAFEHLGMNVEFLRVRLRRLVSIAYETNDALEARKYLACRNEYTRADDEIKNMEAKLEELKGACYEFGAYLESLKCKAESYHVKFKKEVATPW 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01302 483 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
Cca11g01302 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 39 420 IPR044837 -
Cca11g01302 483 SMART B3_2 122 213 IPR003340 GO:0003677
Cca11g01302 483 Coils Coil 426 453 - -
Cca11g01302 483 Gene3D - 101 215 IPR015300 -
Cca11g01302 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 39 420 - -
Cca11g01302 483 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
Cca11g01302 483 CDD B3_DNA 120 211 IPR003340 GO:0003677
Cca11g01302 483 SUPERFAMILY DNA-binding pseudobarrel domain 115 213 IPR015300 -
Cca11g01302 483 MobiDBLite consensus disorder prediction 253 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01302 Cca-Chr11 33517113 33522075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01302 99 217 B3 DNA Binding Superfamily AT5G42700 49.580 8.42e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca11g01302 B3 6.3e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01302 - - gmx:100819237 781.941