Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01280 ATGGCAAACCCAAAGTGCTTCCTCGACGTCTCCATCGCCGGCGACCTCGAAGGCAGGATCTTCGTCGAGCTCTTCCGCGACGTCGTCCCCAAGACAGCAGAGAATTTCCGCGCCCTCTGCACCGGCGAAAAGGGCCTCTCCGCCACCTCCGCCGTCCCCCTCCACTTCAAGGGCGTCCGCTTCCACCGCGTCATCAAGGGCTTCATGATCCAGGGCGGCGACATCACCGCCGGCGACGGCACCGGCGGCGAGTCCATCTACGGCCCCGCCTTCGACGACGAGAGCCTCGACCTGAAGCACGAGCGCAAGGGCATGCTCTCCATGGCCAATGCGGGCCCCAACACCAACTCCTCCCAGTTCTTTATCACCACCACGCGCACGCCTCACCTCGACGGCAAGCACGTCGTCTTCGGGAGAGTCCTCAAGGGCATGGGCGTCGTTCGCTCCGTCGAACACGTCGTTACGGGAGATAACGACCGTCCTATTCAAGACGTCCTCGTTGTGGATTGCGGCGAAATTCCCGAAGGGGAGGACGATGGCGTTGTTAACTTCTTTAAGGATGGTGACACCTATCCTGATTGGCCCATGGATCTTGATGTCAAACCCGATGAACTTTCTTGGTGGATGAGTGCTGTCGACGCCATCAAAGCCCTCGGAAATGAACAGTATAAGAAGCAAGATTATAAGATGGCTCTCAGAAAGTATCGCAAAGCGTTGCGCTATTTGGATGTTTGTTGGGAGAAGGACGACATTGACCAAGAGAAGAGTGCTGCTTTGAGGAAGACGAAATCTCAAATCTTTACCAACAGTTCTGCTTGTAAATTGAAATTAGGCGATCTACAAGGAGCCTTACTGGATTCAGACTTTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTTCTCAACGACCTAGATTCTGCTGTTGAAAGCTTCAAGAAAGCATTGGAGTTGGAGCCGAATGATGGAGGGATTAAAAAAGAGTATGCCACTGCCAGGAGGAAGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAAAATGTTCAAATAG 1083 0.5272 MANPKCFLDVSIAGDLEGRIFVELFRDVVPKTAENFRALCTGEKGLSATSAVPLHFKGVRFHRVIKGFMIQGGDITAGDGTGGESIYGPAFDDESLDLKHERKGMLSMANAGPNTNSSQFFITTTRTPHLDGKHVVFGRVLKGMGVVRSVEHVVTGDNDRPIQDVLVVDCGEIPEGEDDGVVNFFKDGDTYPDWPMDLDVKPDELSWWMSAVDAIKALGNEQYKKQDYKMALRKYRKALRYLDVCWEKDDIDQEKSAALRKTKSQIFTNSSACKLKLGDLQGALLDSDFAMHDGDNAKALFRKGQAYMFLNDLDSAVESFKKALELEPNDGGIKKEYATARRKVADRRDQEKKAYSKMFK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01280 360 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Cca11g01280 360 Pfam Tetratricopeptide repeat 297 330 IPR001440 GO:0005515
Cca11g01280 360 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 171 IPR002130 GO:0000413|GO:0003755
Cca11g01280 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Cca11g01280 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Cca11g01280 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Cca11g01280 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Cca11g01280 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Cca11g01280 360 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Cca11g01280 360 Gene3D Tetratricopeptide repeat domain 212 360 IPR011990 GO:0005515
Cca11g01280 360 SUPERFAMILY TPR-like 210 357 IPR011990 GO:0005515
Cca11g01280 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 360 - -
Cca11g01280 360 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Cca11g01280 360 ProSiteProfiles TPR repeat region circular profile. 297 330 - -
Cca11g01280 360 SUPERFAMILY Cyclophilin-like 2 175 IPR029000 -
Cca11g01280 360 MobiDBLite consensus disorder prediction 341 360 - -
Cca11g01280 360 Gene3D - 1 179 IPR029000 -
Cca11g01280 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 360 - -
Cca11g01280 360 SMART tpr_5 212 245 IPR019734 GO:0005515
Cca11g01280 360 SMART tpr_5 297 330 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01280 Cca-Chr11 32943381 32947843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01280 17 170 U-box Gene Family AT5G67530 42.581 5.44e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01280 K05864 - gmx:100803839 662.914