Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01278 ATGCGCTGGTTACCCTTCTCTCCTTCCGCCGACCACCGCAAGAAGGCCTGCCTATTGGGGAATTCCTCCAAGAAGCGcgcctgcgacgactcctcctcctcctcctccgtcacgcctctgccgttgcccctgccggagctcgccgccgccgccgTTGTTCTCCGCCAGAGAGACGCCGAGTGCCGCCTTCCCTCGCCCAAGGATGCTGCGCCCGCCTCCACCTCCACCTCCGGATTTCGGATGCGCAGTGTTTTTGCTAGCCAAGAGACAAGAAGGAATATGGAGCAGGCTGAAACTAGGTCATCAAGGATGGGGAACCATGATGCAAGTGGTTGTTGCGAGAGTGCTCGAGataatagtaataatagtaataataataataataaCTTGTTGAGTATACCTGGTAGGAGGAGTATTTCAGGTAGTCCTTCAATGAGTCCACAGAAAACAAAGAATGGTGATTTTGTGCCATATTATTACGTGAGTCCCAAAGGAAATCAGCACTGGTCTGCACCAGAAATGGCTACCTGTGAAGCAGGGTTGCCACCTCCTGCATTCTTTGATTTATCTGAATCTTCTCCAACCTCCCATCAAAGTCCACAGAGAAGAAGTCCTCGGCGGCAACACATGAGAACCTTGAGTGGACCTGCATCCCCCATCCATTCCATGTTATCGCCCGAGACCTCAACGGCACGCCGCGAAAGTAATGCTCCTCCTGTCAGTGTTCACcccttgcccctgcctcctggggctgccctgccttcgccttctgctgccaccgccttttcccatgcccTGGCTAAGTCAGAATCGTTGCCAATGAAAAGCCAATGGCAGAAGGGGAAACTTATTGGCCGTGGCACGTTTGGAAGTGTCTATGTTGCGACCAATAGGGAAACCGGAGCATTATGTGCAATGAAGGAAGTAGAACTACTTCCTGATGATCCGAAATGTGCAGAGTGTATAAAACAGTTGGAGCAGGAAATTAAAGTTCTTAGCCATCTTAAACATTCAAACATTGTGCAGTATTATGGCAGTGAAATAGCTGAGGACCGATTTTATATTTATCTGGAATATATTCATCCTGGTTCAATAAATAAATACGTCCGTGAACATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGCCACATTCTGTCAGGGTTGGCTTATTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGAGCTAACTTGCTTGTTGACTCTGCTGGAGTTGTTAAGCTTGCTGATTTTGGGATGGCTAAGCATCTAACTGGGATCGAAGCTACTCTTTCTTTGAAGGGAAGTCCATACTGGATGGCTCCAGAGCTTCTGCAGGCAGTGATGCAAAAGGATAGCAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCCGCAGCTCTGTTTAAGGTTATGAAGGAAACCCCCCCTATACCTGAAACATTGTCGTCTGAGGGTAAAGATTTTTTGAGGTGCTGCTTTAAAAGAAATCCAGCAGAGCGACCAACAGCTGCAGTTTTACTAGAACATCGTTTTTTGAAAAACTCACAACAGCCGGATGTTTTATCTTCCACTCAGCTGTACCATGGAACAAGCTTCATGGACAAACCACATAGTCCCAGTGGACAATCTGAGAATAAATATGATCAGTCGTTAATCCCATGTGCAAAGATTGCAAAGGAGAAAGCAGCTGAGAGGCGAGGATTTCTCATTACTTCGTTAGATATTCTCCCTGCATATTGTCACCAATAA 1830 0.4137 MRWLPFSPSADHRKKACLLGNSSKKRACDDSSSSSSVTPLPLPLPELAAAAVVLRQRDAECRLPSPKDAAPASTSTSGFRMRSVFASQETRRNMEQAETRSSRMGNHDASGCCESARDNSNNSNNNNNNLLSIPGRRSISGSPSMSPQKTKNGDFVPYYYVSPKGNQHWSAPEMATCEAGLPPPAFFDLSESSPTSHQSPQRRSPRRQHMRTLSGPASPIHSMLSPETSTARRESNAPPVSVHPLPLPPGAALPSPSAATAFSHALAKSESLPMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVELLPDDPKCAECIKQLEQEIKVLSHLKHSNIVQYYGSEIAEDRFYIYLEYIHPGSINKYVREHCGAITESVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGIEATLSLKGSPYWMAPELLQAVMQKDSSPDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPPIPETLSSEGKDFLRCCFKRNPAERPTAAVLLEHRFLKNSQQPDVLSSTQLYHGTSFMDKPHSPSGQSENKYDQSLIPCAKIAKEKAAERRGFLITSLDILPAYCHQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01278 609 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 26 584 - -
Cca11g01278 609 SMART serkin_6 278 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01278 609 MobiDBLite consensus disorder prediction 62 153 - -
Cca11g01278 609 MobiDBLite consensus disorder prediction 69 92 - -
Cca11g01278 609 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 26 584 - -
Cca11g01278 609 Pfam Protein kinase domain 279 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01278 609 SUPERFAMILY Protein kinase-like (PK-like) 271 570 IPR011009 -
Cca11g01278 609 ProSitePatterns Protein kinases ATP-binding region signature. 284 307 IPR017441 GO:0005524
Cca11g01278 609 Gene3D Transferase(Phosphotransferase) domain 1 274 576 - -
Cca11g01278 609 ProSiteProfiles Protein kinase domain profile. 278 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01278 609 MobiDBLite consensus disorder prediction 103 151 - -
Cca11g01278 609 MobiDBLite consensus disorder prediction 218 236 - -
Cca11g01278 609 MobiDBLite consensus disorder prediction 182 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01278 Cca-Chr11 32914917 32920077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01278 108 583 MAP Kinase Kinase Kinase AT5G66850 60.792 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca11g01278 Pkinase 4.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01278 - - gmx:100790701 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01434 06 29223771 29233133 Cca11g01278 11 32914917 32920077 PCT