Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01276 ATGTCATCGTCGAATTCACCGTGTGCGGCGTGCAAGCTTCTGCGGCGGAAGTGCACTCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGCGTGCGTGCACCGCGTGTTCGGCGCGAGTAACGTGGCGAAGCTGCTGAACGAGCTCAGCATGGCGCAACGTGAAGACGCCGTTAAGTCGCTGGCGTACGAGGCGGAGGCGCGCTTGAGGGACCCCGTGTATGGCTGCGTGGGGTTCATCTCCCTGCTGCAGCAACGGCTCCGTCAAATCCAAACGGAGCTTCACAACGCCAAGAAGGAGTTATCCACGTATGTTAGCCCCCAAGCCATGCAGGTTCTCTTGGCCAATCCTGGCATGTTGCCACCCATGCTGCCCCATTTGCATCATCAATCTATGTTCAATAATTGTGGCGGCGCCAACAATGTGGCCTCCCAAGTTTTGGTTGCCCACGGTGGTGGTGGCGGTGACCAGATGGTCATTCGTGACACACCACCGCAGGAGTTTCTAGAAGCTCAGCAAATGGCTCTTGTACCTAGGGATCATCATTTTCATCAACACCACGACCAGTACCAAGATCAACAACGAAACCAAcatcaggatcagcaccaggaccagcatcagcatcagcatcagcaCCAAGTTATGTTTCGAAACTATGAGGAGCAAGAGTTTATGAAGTTTGATAATGGGTTTGAGCAGAGTGGTGGTGGGTTTGGGAGCCAGGTGGAGTGTTTGCCTCCTTCTTTGTCTCTTGGAAGCTTTGAGAATGTTGGGCCTTACCCGGTGCAACAACATGGAGAACAACAACATCCCATGGAGGCACAATTGTTGCTCACTCCACAGCAGCAGCAGTCGCAGGAACAACCCCATCAACAACGGTGTGAGAGTGAGGATGGGAGGACTGTTGTTCCCGCTTGA 936 0.5182 MSSSNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFACVHRVFGASNVAKLLNELSMAQREDAVKSLAYEAEARLRDPVYGCVGFISLLQQRLRQIQTELHNAKKELSTYVSPQAMQVLLANPGMLPPMLPHLHHQSMFNNCGGANNVASQVLVAHGGGGGDQMVIRDTPPQEFLEAQQMALVPRDHHFHQHHDQYQDQQRNQHQDQHQDQHQHQHQHQVMFRNYEEQEFMKFDNGFEQSGGGFGSQVECLPPSLSLGSFENVGPYPVQQHGEQQHPMEAQLLLTPQQQQSQEQPHQQRCESEDGRTVVPA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01276 311 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 270 - -
Cca11g01276 311 MobiDBLite consensus disorder prediction 187 219 - -
Cca11g01276 311 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cca11g01276 311 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cca11g01276 311 Coils Coil 86 106 - -
Cca11g01276 311 MobiDBLite consensus disorder prediction 274 296 - -
Cca11g01276 311 MobiDBLite consensus disorder prediction 262 311 - -
Cca11g01276 311 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01276 Cca-Chr11 32897462 32898462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01276 1 120 AS2 family AT5G66870 78.333 2.26e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca11g01276 LOB 8.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01276 - - gmx:100796406 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01433 06 29206458 29207465 Cca11g01276 11 32897462 32898462 PCT