Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01275 ATGGAGAGGCCAACTTCAACGCGAAAAGTACCATGTGGTGCATGCAAGTACCAACGTAGGAGGTGTGGGCAATACTGTTTGTTTGCGCCGTACTTCCCAGCAGAGAACATCCAAATGTTCGCATGCGTGCACCACGTGTTCGGCGCGGCCAATGTGGGGAACGTTATCAAGTCACTGAGTGATCCGCAATTGCGAAAGCTGGCAGTGAACACGCTGGTGTACCAAGCGGAGGCGCGTGTGAGGGACCCCACCTACGGCGTTGTGGGCCACATCATGGAGTTGGAGCAGAGGCACCGCAAAGTTCAAGAGGACCTCATGAGGGCCAAGGCCCAACTGGCCCAATACCTAGGCCCAGAGGGCATGAGAAAGGAGTTTAGTTTGTGTTTGGGTGCCTCTTCCAAGGGCAAGAACAAATGTGATGAGACTCCAGAGCCCCACATGTCGTCATTTCGGCGTTTGTGTACTGACTCTGACGTTGAGATGTGGGACCCTTTTCCGCCGTGGGAAACTTTTGATGACACTCAGTCTGGTGAGAAGTTGTCCTCAGATTTGGGAGAGAACAATGTTGGTTCTTCTTCGCTGCAGGGTCATGGTGATAAGAAAGGGAAGAGGCCTGCAGATTTTCCTTCAACACCTGCTTAA 642 0.5265 MERPTSTRKVPCGACKYQRRRCGQYCLFAPYFPAENIQMFACVHHVFGAANVGNVIKSLSDPQLRKLAVNTLVYQAEARVRDPTYGVVGHIMELEQRHRKVQEDLMRAKAQLAQYLGPEGMRKEFSLCLGASSKGKNKCDETPEPHMSSFRRLCTDSDVEMWDPFPPWETFDDTQSGEKLSSDLGENNVGSSSLQGHGDKKGKRPADFPSTPA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01275 213 Coils Coil 91 111 - -
Cca11g01275 213 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Cca11g01275 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 9 133 - -
Cca11g01275 213 MobiDBLite consensus disorder prediction 174 195 - -
Cca11g01275 213 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Cca11g01275 213 MobiDBLite consensus disorder prediction 165 213 - -
Cca11g01275 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01275 Cca-Chr11 32855484 32856288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01275 11 121 AS2 family AT5G66870 54.054 3.98e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca11g01275 LOB 8.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01275 - - ccaj:109814438 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01275 11 32855484 32856288 Cca06g01433 06 29206458 29207465 PCT