Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01274 ATGGAACCGAACTTGGATTTGAGTTTGGCCTTTGTCCCCATTTCTGAGATTCTTAGTGAGGTTTCTCAGGGCAAAGATGGGTCTCAGAAAAACGAGGACTTTGTTCAAAGGTTGGAAGATGAGAAGAGGAAGATCGAGGCCTTCAAACGGGAGCTTCCTCTTTGCATGATGATTGTAAACGATGTTATAAGTAGATTGAAAGGGGAAATAAAGGGTGTAAGAATGCAAGATAAACCTGTGGTTGAGGAATTGGTGCCACTTATGGAAACCAATTCTGAAGAAAATGGGTCTTTGATTGCGAGAAAGGAAAAAAGCAGTGACACGAAGAAATGGATGAACCTTTTTCCGCTATGCAACGCTGAAACCAATCCGAGGAATAAAGAGGGTGATCGGTGTGTGCCAAAGAATCCAATTCAACCACAGAAGGAGACCGACGAGAGTGGAGGAACATCATCACTAGCATTCAATGGAAACAAGTGTGTCTCGAAGACAGTGATGAGGGATGACAAGGTTCCTAGCCTTGGTTTGACGACTCCAATGTTTGAATTGAATCATAGAAAAACAGAAAGTGGTTGTGGACACAGTTCATCATTAATTACAAGTCCAGTTAAAAGTAAGGGTCAATTGCAATCACTGCAGAATACCAAAAAACAAAGGCGAAGTTGGTCACCAGAGCTTCATCGAAAATTTGTTGATGCGCTTCAACAATTAGGAAGACCACAAGTGGCCACTCCAAAGCAGATCAAAGAACTGATGCAGGTGGTTGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATTTTAAAAGGCCACAAGTTTGTTCAAATGGGCAGGGTAATAATAGAAATAGTGGGTTAGGCATGATGGCAGAAGATAAATCAAAGGGAAATTTATCACAATCTGGTTCTCCACAAGGTCCTCTGTTCCTAGGAGGATCTGGTAAAGGTCTTTCAAGCTCTGGACGCAACAGCACAGAGACAGAAGAAGATGAGCAATCAGATTGTCGCAATTGGAAAGGGGGGCTTCACCCAACCAGAAGTTGA 1059 0.4259 MEPNLDLSLAFVPISEILSEVSQGKDGSQKNEDFVQRLEDEKRKIEAFKRELPLCMMIVNDVISRLKGEIKGVRMQDKPVVEELVPLMETNSEENGSLIARKEKSSDTKKWMNLFPLCNAETNPRNKEGDRCVPKNPIQPQKETDESGGTSSLAFNGNKCVSKTVMRDDKVPSLGLTTPMFELNHRKTESGCGHSSSLITSPVKSKGQLQSLQNTKKQRRSWSPELHRKFVDALQQLGRPQVATPKQIKELMQVVGLTNDEVKSHLQKYRLHFKRPQVCSNGQGNNRNSGLGMMAEDKSKGNLSQSGSPQGPLFLGGSGKGLSSSGRNSTETEEDEQSDCRNWKGGLHPTRS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01274 352 MobiDBLite consensus disorder prediction 277 352 - -
Cca11g01274 352 MobiDBLite consensus disorder prediction 278 292 - -
Cca11g01274 352 PANTHER TRANSCRIPTION FACTOR HHO5 1 347 - -
Cca11g01274 352 MobiDBLite consensus disorder prediction 190 219 - -
Cca11g01274 352 MobiDBLite consensus disorder prediction 187 224 - -
Cca11g01274 352 MobiDBLite consensus disorder prediction 122 154 - -
Cca11g01274 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 274 IPR017930 -
Cca11g01274 352 MobiDBLite consensus disorder prediction 140 154 - -
Cca11g01274 352 Pfam Myb-like DNA-binding domain 219 270 IPR001005 -
Cca11g01274 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 217 272 IPR006447 GO:0003677
Cca11g01274 352 Coils Coil 31 51 - -
Cca11g01274 352 Gene3D - 216 274 - -
Cca11g01274 352 SUPERFAMILY Homeodomain-like 215 275 IPR009057 -
Cca11g01274 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 347 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01274 Cca-Chr11 32840443 32842985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01274 4 273 G2-like Transcription Factor Family AT4G37180 38.434 4.30e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca11g01274 Myb_DNA-binding 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01274 - - gmx:100794220 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01274 11 32840443 32842985 Cca06g01431 06 29182241 29184463 PCT