Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01271 ATGGAAGAGACAGCACAACTAGTTTCCGTTGGAATGAAGAGTCCTTTTGGTGTTCCTGAAAAGCCAGAATTCATTGTTGGGTTGGATGTAACATTGAGCAAGTTGAAGATGGAGCTTCTCAAAGAAGGTGTGTCCATCATTCTGTTAACTGGTTTTGGAGGATCGGGGAAAACCACTTTGGCCACCAAGCTCTGTTGGGATGAACAAGTCAAGGGTAAGTTTAAGGAAAATATATGTTTTGTGAGCTTCTCAAAATGGCCAAAGTTGAAGAATATCGTAGAAAGATTATTTGAACAATTAGAATATCAAGTGCCTGAGTTTGAAAGCGATGAAGCTGCAATTAATGAATTGGAACATGTGCTAATGAAATTTGAGGGAAGCCCAATGTTGGTGGTTTTGGACGATGTTTGGGCTGGCTCAGAAGCCGTGGTGGAGAAATTTAAATTCCATTGTTTATCAGATTATAAAATTTTGGTTACTTCAAGGTTTGCATTTCCTACATTTGGCACCTCGTCGTGTGTCTTAAAACCACTGCTTCACGAAGATGCAATCACCCTTTTCCGGCACTACGCTCTCTTGGACGGCAACAGATTAAATACACCTGACGAAGATGTAGTCCAAAAGGTTGTGAGAAATTGCAAGGGATTACCGCTTGCCATTAAAGTGATTGGTAGGTCACTCCGCCATCAACCTTATGAATTGTGGCAAAAGATGGTGGAGGAATTGTCACAAGGTCATTCTTTACTTGATTCCAACACTGAATTGCTAACTTACCTTCAAAAGATGTTAGATGTCTTGGAAGATAATACAGTCATCAAAGAGTGCTTCATGGACTTAGGGTTATTTCCTGAAGACCAAAGAATTCCCGTCACTGCTCTCATTGATATATGGGCTGAGTTGTATGGAGTAGACAATGATGGCATAGAAGCAATGGCCATCATCAACAAATTAGACTCCATGAATCTGGTTAATGTCATAATAGCAAGGAAAAATACAAGTGACACGGATAATTACTACTACAATAACCACTTCATCGTCCTTCATGATCTTCTAAGAGAACTAGCAATTCACCAAAGCACCCAGGAACCAATTGAAGAGAGAAAAAGACTGATTATTGATACAAATGAAAATAAAAGTGAATGGTGGCATGACGAGAAGCAACAAGGCATTATGACCCGCATGTTGTCCATTATTTTCAGATATTGTGTTAAACAGAAACCCCTTCAGGTCCCTGCTCGTACATTGTCCATGTCAATTGATGAAACTTGCAATTCATATTGGTCGTCACACATGCAACCAGCTCAAGCCAAGGTTCTGATTTTAAATCTTCGAACTAATCAGTACACCTTTCCAGAGTTCATTGAGAATATGAGCAAACTCAAAGTTCTGATTGTCACAAATTACAATTTCCATCCTTCTGAGCTGACCAATTTTGAGCTACTTGGCTCTTTATCCAACCTGAAAAGAATTAGACTAGAGAGGATTTCTGTTCATTCATTTGTCACATTGAAGAATCTTAAAAAACTATCCCTCTACATGTGCACCATGAGTCATGAAAATGGTATCATCCTATTTTCAGATGCATTTCCAAATCTAGTAGATTTAAGCATTGACTATTGCAAAGACATGGTGGGGTTGCCTAATGGGGTGTGTGACATTACCCCACTGAAGAAACTCAGTGTTACTAATTGCCACAAGCTCTTGAAACTGCCCCAAGAAATTGGAAATAAGTTGGTGAATTTGGAACTCCTAAGGCTCAATTCTTGTACCGGTTTGGAAGGGATGCCAGATTCTATCGGAGGGCTTTCAAATCTAAGGCATCTTGACATCTCAAATTGTATTAGCCTTTCCAATTTACCTGAGGACTTCGGAAAACTGTTTAATCTAAGAAATCTCTACATGACAAGTTGTGCTAGGTGTGAATTGCCATCCTCAGTGATCAATCTTGTGAATTTGAAGGTAGTGATATGCGATGAAGAAACAGCTGCTTCATGGGAAGGGTTTGAAGCTATGCTTCCTAATCTACTGATAGAGGTGCCTCAAGTGGATGTTAACTTAAACTGGCTCCATTCAGTTAGCTCCTAA 2085 0.3962 MEETAQLVSVGMKSPFGVPEKPEFIVGLDVTLSKLKMELLKEGVSIILLTGFGGSGKTTLATKLCWDEQVKGKFKENICFVSFSKWPKLKNIVERLFEQLEYQVPEFESDEAAINELEHVLMKFEGSPMLVVLDDVWAGSEAVVEKFKFHCLSDYKILVTSRFAFPTFGTSSCVLKPLLHEDAITLFRHYALLDGNRLNTPDEDVVQKVVRNCKGLPLAIKVIGRSLRHQPYELWQKMVEELSQGHSLLDSNTELLTYLQKMLDVLEDNTVIKECFMDLGLFPEDQRIPVTALIDIWAELYGVDNDGIEAMAIINKLDSMNLVNVIIARKNTSDTDNYYYNNHFIVLHDLLRELAIHQSTQEPIEERKRLIIDTNENKSEWWHDEKQQGIMTRMLSIIFRYCVKQKPLQVPARTLSMSIDETCNSYWSSHMQPAQAKVLILNLRTNQYTFPEFIENMSKLKVLIVTNYNFHPSELTNFELLGSLSNLKRIRLERISVHSFVTLKNLKKLSLYMCTMSHENGIILFSDAFPNLVDLSIDYCKDMVGLPNGVCDITPLKKLSVTNCHKLLKLPQEIGNKLVNLELLRLNSCTGLEGMPDSIGGLSNLRHLDISNCISLSNLPEDFGKLFNLRNLYMTSCARCELPSSVINLVNLKVVICDEETAASWEGFEAMLPNLLIEVPQVDVNLNWLHSVSS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01271 694 Gene3D - 260 358 IPR036388 -
Cca11g01271 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 279 IPR027417 -
Cca11g01271 694 Gene3D Ribonuclease Inhibitor 434 667 IPR032675 -
Cca11g01271 694 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 16 680 IPR039203 GO:0050832
Cca11g01271 694 PRINTS Disease resistance protein signature 46 61 - -
Cca11g01271 694 PRINTS Disease resistance protein signature 123 137 - -
Cca11g01271 694 PRINTS Disease resistance protein signature 213 227 - -
Cca11g01271 694 PRINTS Disease resistance protein signature 600 616 - -
Cca11g01271 694 Pfam NB-ARC domain 32 255 IPR002182 GO:0043531
Cca11g01271 694 Gene3D - 8 165 IPR027417 -
Cca11g01271 694 Gene3D - 178 259 IPR042197 -
Cca11g01271 694 SUPERFAMILY RNI-like 437 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01271 Cca-Chr11 32737693 32743642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01271 483 652 WRKY Transcription Factor Family AT4G12020 27.979 1.68e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01271 - - gmx:100808032 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01428 06 29141607 29147469 Cca11g01271 11 32737693 32743642 PCT