Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01269 ATGGCTATGGTTCTAGACGCTGTTGCCGGCAAGGTGCTTGATGAATTGCTGAATGTCATAGTGGAAAAGAAAGAGCGGGCAGTGAAGTTCAGACCCACGCTGGAACGGTTGGAGGGCACGCTGAAATCAATAGAACCATTGGCGAAGCAGATAGATGGTCTGAACAAGCGATTGGATCGTCCACCTGAGGAAACGGAGAAGCTGATAGAACAGATGAAGAAGGGGACGAAGCTTGTGAAGGCGTGCTCCAAAGTGCAGTGGTGGAATTGCTGCAACAAGGCCAATTACCAAGAGGAGCTTGAGGAGTTGGAAGCGTGCATTGATAGGTTCTTTAAGTATGACATGCAGGGTCAGACAAACAGGAACGTGTTGGAGGCCCTGGTGGTGATTAAGGATGTTCATGCGGATATTAGAAATTTTGCTCCAAGGAGGAGTGAGTTGAGTGGCGTGTGTTTGCCTCCTGAGCCTCCTGCTTTCACTGTTGGCTTGGATGTTCATTTGAGGGAGTTGAAGCTCAAGCTGCTGCATGCCCATCATGTGGCCTCGGTGCTCACGGTCACCGGAACCGGGGGATCCGGGAAGTCTACGTTGGCCAAGAAATTTTGTTGGGACCAGGATGTCAAAGGTAAATTCAAGGAAAACATATTCTTCATCACCTTTGCCAAGTCGCCCAAGTTGAATACCATAGTGCAGAGACTGTTTCAACACACTGGTTACCAAACGCCAGAGTTCCAAAGTGACGATGACATGATTTACCAATTGGAACATTTGCTGAAAAAGATTGTTGAGAAAAGCCCAATACTGTTGGTCCTCGATGATGTTTGGCCCAAGTCAGTGTCTCTTGTTGACAAATTTGTGTTCCAGATACCAAATTACACCATTTTAGTTACATCTAGATTCGCAATTGGAGAATTTGGCCCACCATATGTCTTGAAACCCCTTGATGAAACCAATGCTATAAAATTACTTCGTCACTCAGCATCTCTGGATGAGAGCAGATCTGACATTCCAGATGATGTTGTCAAAAAGATTGTGAGAGGGTGCAGTGGTTCTCCCTTGGCACTTAGAGTAAATGGCAGATCACTAAGTCATAAACAAGCGTTGTTTTGGCACAACAGGGCTCAGGCATTGTCCACGGGTCATTCAATAATTGTTTCTAGTGACGATGTGCTTACTTGTCTCCAAAAGAGCTTCGAAGACTTGGATCCTAAGGTGGCTGAGTGTTTTAGGGACCTAAGCTTATTTCCTGAAGCCCAGAGGATCCCTGCTGCTGCCCTTGTTGATATATGGGCAGAACTGCGTGAAGAAGATGATGGCAGTGCAATGGAGAAGATCTATGAACTTGTCAACCGGAACATGGCTGATATTGTTGTCACAAGGAATACTGCGAGTGACACAATTGACTATAATTACCACTATGTTACACAGCATGGTCTTCTTCGGGACCTGGCTATTCTCCAAACAAGCCAGGAGCCAACGGAAAAGAGGAATAGACTAATTATTGACCTAAGTGGTAACAATCTTCCCGAATGGTGGACTTCACAGAATGAGTATCACATTGCAGCCAGCACACTTTCCATATCAACAGATGAAGCATTCACTTCAGAGTGGTGCAACTTGCAGCCAACTGAGGTTGAGGTTCTCGTGCTAAACCTTCGAGAAAAGAAGCACACACTACCAATGTTCATGAAGAAAATGAATAAACTAAAAGTCCTGATAATAACGAATTATGACTTCTATCGTGCTGAATTGGAGAATTTCGAGCTGCTTGATTATCTATCTGATCTCAAACGAATCAGGTTAGAGAAGGTTTCAATTCCTTTCCTTAGCAAGACTGGAGTGCAATTGAAGAATCTTCAGAAATTTTCTTTCTTTATGTGCAATATGAATGAAGCATTCAAAAATAGCACCATCAAAATTTCCGATGTACTGCCAAATTTGGAGGAGATGAACATTGACTACTGTGATATGCTGCAATTGCCAAATGGGCTCTCTGATATTGTTTCCTTAAAGAGGCTCAGCATCACAAACTGCCACAAGCTTTCTGCACTTCCTGAGGGAATCGGGAAGTTGGTGAATTTGGAATCACTAAGGCTTACTTCATGTACTAGTTTAGAAGAGTTGCCAGACTCAATCACAGGCCTTCAAAAACTGAAATTTCTTGACATCTCTGACTGCGTAAGCCTTGTTAAGTTACCCGAGAACATGGGGGAGTTGAGTAGTTTAGAAAGGCTCAATTACATAGGTTGCACGAGATTGAATGAATTGCCATACTCAGTCACTGAGCTTGGGGGCTTAAGGGTTGTGGTATGTGATGAAATGACGACTGCATTATGGGAACCTTTCAGAACCATGCGTGGTGATATAAAGCTAGATGTGACTCAAGTTGATTTCAACTTAAATTGGCTTCTATAA 2415 0.4377 MAMVLDAVAGKVLDELLNVIVEKKERAVKFRPTLERLEGTLKSIEPLAKQIDGLNKRLDRPPEETEKLIEQMKKGTKLVKACSKVQWWNCCNKANYQEELEELEACIDRFFKYDMQGQTNRNVLEALVVIKDVHADIRNFAPRRSELSGVCLPPEPPAFTVGLDVHLRELKLKLLHAHHVASVLTVTGTGGSGKSTLAKKFCWDQDVKGKFKENIFFITFAKSPKLNTIVQRLFQHTGYQTPEFQSDDDMIYQLEHLLKKIVEKSPILLVLDDVWPKSVSLVDKFVFQIPNYTILVTSRFAIGEFGPPYVLKPLDETNAIKLLRHSASLDESRSDIPDDVVKKIVRGCSGSPLALRVNGRSLSHKQALFWHNRAQALSTGHSIIVSSDDVLTCLQKSFEDLDPKVAECFRDLSLFPEAQRIPAAALVDIWAELREEDDGSAMEKIYELVNRNMADIVVTRNTASDTIDYNYHYVTQHGLLRDLAILQTSQEPTEKRNRLIIDLSGNNLPEWWTSQNEYHIAASTLSISTDEAFTSEWCNLQPTEVEVLVLNLREKKHTLPMFMKKMNKLKVLIITNYDFYRAELENFELLDYLSDLKRIRLEKVSIPFLSKTGVQLKNLQKFSFFMCNMNEAFKNSTIKISDVLPNLEEMNIDYCDMLQLPNGLSDIVSLKRLSITNCHKLSALPEGIGKLVNLESLRLTSCTSLEELPDSITGLQKLKFLDISDCVSLVKLPENMGELSSLERLNYIGCTRLNELPYSVTELGGLRVVVCDEMTTALWEPFRTMRGDIKLDVTQVDFNLNWLL 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01269 804 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Cca11g01269 804 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 803 IPR039203 GO:0050832
Cca11g01269 804 Pfam NB-ARC domain 166 378 IPR002182 GO:0043531
Cca11g01269 804 Gene3D - 398 485 IPR036388 -
Cca11g01269 804 Gene3D Ribonuclease Inhibitor 486 785 IPR032675 -
Cca11g01269 804 PANTHER LRR AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 1 803 - -
Cca11g01269 804 Gene3D - 313 397 IPR042197 -
Cca11g01269 804 PRINTS Disease resistance protein signature 183 198 - -
Cca11g01269 804 PRINTS Disease resistance protein signature 261 275 - -
Cca11g01269 804 PRINTS Disease resistance protein signature 348 362 - -
Cca11g01269 804 PRINTS Disease resistance protein signature 713 729 - -
Cca11g01269 804 SUPERFAMILY L domain-like 493 765 - -
Cca11g01269 804 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 138 IPR008808 -
Cca11g01269 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 412 IPR027417 -
Cca11g01269 804 Gene3D - 145 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01269 Cca-Chr11 32652865 32658227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01269 184 798 WRKY Transcription Factor Family AT5G45050 21.839 2.34e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01269 - - gmx:100812310 1157.51