Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01239 ATGGCCAAAGATCACGAATTCGCCATAGGAATTGACCTTGGTACAACTTACTCGTGTGTTGCAGTATGGCAGGAGCAACAGTGTCGAGTGGAAATCATCCATAATGACCAAGGCAAGAACACCACTCCTTCTTCTGTTGCTTTCACGGAACATGAAAGGTTGATCGGTGATGCGGCTGAAAATCAAGCTGCCACCAACCCCGAGAACACTGTCTTTGATGCTAAGAGGTTGATCGGTAGAAAATACAGTGATCCCATTATTCAAAAGGATAAAATGTTGTGGCCATTCAAGGTCATTGCTGGTATTAATGACAAGCCCATGATTTCTGTTAAGTACAAAGGTCAAGTGAAGCACCTTTCAGCTGAGGAAGTATCATCTATGATCCTTGCAAAGATGCGAGAGATTGCAGAGGCGTGTTTGGAAGCACCAGTGAAGAATGCTGTTATTACTGTTCCTGCTTATTTCAATGATTCTCAGCGAAAAGCCACCAAAGATGCTGCCATCATTGCTGGCCTCAATGTAATGCGGATAATCAATGAACCCACTGCTGCAGCTATTGCATATGGCCTTGAGAAGAAAAATAATTGCGTCGGAGAGCGAAATATTTTCATATTTGACCTTGGTGGTGGTACTTTTGACGTGTCTCTCCTCACAATTAAGGATAAGGTTTTTGAAGTTAAGGCTACAGCAGGAAACACTCATCTTGGGGGAGAGGACTTCGACAACAGAATGGTGAACTACATGGTGCAAGAGTTTAAAAGGAAGAATAAAGTGGACATTGGTGGTAACCCAAGAGCCCTAAGAAGGTTGAGAAATGCATGTGAGAAGGCTAAAAGGGTACTCTCGCATGCTGTTACTACCTACATTGAGTTAGATGCTTTATTCGAGGGCATTGACTTGTGTTGTTCGATCAGTCGTGCAAAGTTTGAGGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACAGTAGACAAGTGTCTTACTTATGCTAAGATGGACAAGAGCAGTGTGCATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTGCAACAACTACTTGAGGACTTTTTCCGAAGGAAGGATTTGTGCAAGAGCATCAATCCTGACGAGGCTGTTGCTTGTGGTGCAGCTGTGCAGGCTGCTTTGTTGTGTGAAGGCATTAAGAATGTTCCAAACGTGGTATTGTTGGATGTTACACCGTTGTCACTTGGTTGGAAATTACAAGGAGATATCATGGGTGTTGTGATTCCTAAGAATACTACTATTCCGGCGATGAAGACAAAAGACTTTGTCACAATTGAAGATAACCAATCCAGAGTGTTTATCCAGGTTTATGAGGGTGAGAGAACAAGAGCCACTGATAACAACTTGTTGGGTTCCTTCACGCTTTCTGGTCTTCTTCCAGCTCCTCGTGGCCATCCATTTGACGTGTGCTTTGCCATAGATGAAAACGGTATCTTATCTGTCTCTGCCGAGGATAAGACTTCAGGCAATAAAAATGAGATTACCATAGTCAATGATCAAGGAAGATTGTCAGCACAAGAAATTAGAAGAATGATTCAAGAAGCAGAGGATTACCAGGCTGAAGATAAGAAATTCCTAAGGAAGGCCAAAGCAATGAATGATTTGGATTTGTACATTTACAAGATCAATAATGCTCTAAAAAAGAAGGATATCAACTCAAAGCTTAGCTCAAAAGAAAAGAAGGATATCAGTTCTGAAATTTGTAGGGCCAGAGATTTACTTGATGCTAATAACCTGCAACAGCAAGATGATATACTTGTATTTGAGGATTGCCTGGAAGAGCTTGTGGCCATCTATGAACGTGTCATGGGTACGATTAGAGGAGGAAGAGGTGGAGGAAGAATTTACAGGATTAgaggaggaggaggtggaggaggaggagggatggaggaggaATTTACAGGATTAgaagaggaggaggaggaggaggtggaggaggtggaggaggaggaggaggaggaggatttgtag 2007 0.3976 MAKDHEFAIGIDLGTTYSCVAVWQEQQCRVEIIHNDQGKNTTPSSVAFTEHERLIGDAAENQAATNPENTVFDAKRLIGRKYSDPIIQKDKMLWPFKVIAGINDKPMISVKYKGQVKHLSAEEVSSMILAKMREIAEACLEAPVKNAVITVPAYFNDSQRKATKDAAIIAGLNVMRIINEPTAAAIAYGLEKKNNCVGERNIFIFDLGGGTFDVSLLTIKDKVFEVKATAGNTHLGGEDFDNRMVNYMVQEFKRKNKVDIGGNPRALRRLRNACEKAKRVLSHAVTTYIELDALFEGIDLCCSISRAKFEEINMELFEECMETVDKCLTYAKMDKSSVHDVVLVGGSSRIPKVQQLLEDFFRRKDLCKSINPDEAVACGAAVQAALLCEGIKNVPNVVLLDVTPLSLGWKLQGDIMGVVIPKNTTIPAMKTKDFVTIEDNQSRVFIQVYEGERTRATDNNLLGSFTLSGLLPAPRGHPFDVCFAIDENGILSVSAEDKTSGNKNEITIVNDQGRLSAQEIRRMIQEAEDYQAEDKKFLRKAKAMNDLDLYIYKINNALKKKDINSKLSSKEKKDISSEICRARDLLDANNLQQQDDILVFEDCLEELVAIYERVMGTIRGGRGGGRIYRIRGGGGGGGGGMEEEFTGLEEEEEEEVEEVEEEEEEEDL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01239 668 PANTHER HEAT SHOCK 70 KDA PROTEIN 6 617 - -
Cca11g01239 668 SUPERFAMILY Actin-like ATPase domain 199 387 IPR043129 -
Cca11g01239 668 Gene3D - 9 385 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 210 220 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 396 415 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 370 390 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 338 354 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 37 49 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 147 167 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 7 20 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 59 67 - -
Cca11g01239 668 PRINTS 70kDa heat shock protein signature 476 492 - -
Cca11g01239 668 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 621 IPR029048 -
Cca11g01239 668 SUPERFAMILY Actin-like ATPase domain 8 192 IPR043129 -
Cca11g01239 668 MobiDBLite consensus disorder prediction 644 668 - -
Cca11g01239 668 ProSitePatterns Heat shock hsp70 proteins family signature 2. 204 217 IPR018181 -
Cca11g01239 668 Gene3D - 544 660 IPR029048 -
Cca11g01239 668 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Cca11g01239 668 Pfam Hsp70 protein 8 594 IPR013126 GO:0005524|GO:0140662
Cca11g01239 668 PANTHER HEAT SHOCK PROTEIN 70KDA 6 617 IPR013126 GO:0005524|GO:0140662
Cca11g01239 668 Coils Coil 642 668 - -
Cca11g01239 668 Gene3D - 193 367 - -
Cca11g01239 668 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Cca11g01239 668 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 543 IPR029047 -
Cca11g01239 668 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 548 IPR029047 -
Cca11g01239 668 Gene3D Actin; Chain A, domain 4 236 319 - -
Cca11g01239 668 Gene3D - 72 127 - -
Cca11g01239 668 MobiDBLite consensus disorder prediction 633 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01239 Cca-Chr11 31692394 31695979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01239 8 644 Calmodulin-binding Proteins AT3G12580 65.415 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01239 K03283 - gmx:102667578 954.896