Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01232 ATGGAAGTACTTCCTTGTTCTGGTGTTCAGTATGCTGGGGGATCTGATTGCTCACAGCCATGTTCAGGAACAACTTTTGTAAACCAGGGTGAACCTAATTTCCCTGAAAGTACTGATCAGGCTAAATTGGAGGATGATCGATTGAATGATTCATTAAAATTGGAAGGGGCTCAGATAGAAGGACAAGATCAAATGCAACAGACAGTTTGTGAACTCTTGACTAATATAGATTGTCAATGTGGTGGAGCTTCATGTTGTGACTGTCAAGTGGAGGGCCAGAAGGAATTCTATAGTTTTCATGATGTTGAAGATGATGAAATAAATGAACCCTGCTTAGCCTTTGAAAACTCTGTCTCTATTGTTGATACAATTGAAAGTGAATTACCAAATGATATTAGTGAAGTAGAGTTGTTATTTTCTGAACCCACTTGGCTGAAGGGGGATGCGCCTGTGGCATTGTGGGTCAAGTGGAGAGGGAACTGGCAGGCTGGTATTAAATGTGCAAGGGCTGACTGGCCATTATCAACTTTAAAAGCAAAACCAACTCATGGCCGGAAGAAATATTATGTCATATTTTTTCCTCACACAAGGAACTATTCTTGGGCTGATATGCTGCTTGTTCGTTCAATTTATGAGTTTCCCCAGCCTATTGCATACAAAACTCACGAAGCAGGACTGAAAATGGTAAAAGACTTGACTGTTGCAAGACGGTTTATAATGCAAAAGCTAGCCATTGGTGTAATTAGCATTGTTGATCAGCTTCATCCTAATGCCTTGCTAGAAACTGCTCGTGATGTGATGGTTTGGAAGGAATTGGCTATGGAGACTTCTCGTTGTAACAGTTATTCAGATTTTGGAAGAATGCTTCTAAAGCTACAAAATAGCATAGTAAAGCACTACACAAATGCTGATTGGATGCAACATTCATCTTACTCTTGGGCTGCACGATGCCAGAATGCAAATAGTGCCGAATCTATAGAGCTACTGAAGGAGGAATTGTTTGATTCTATTTTATGGAAGGATGTCAACACTCTCTGGGATACACCGGTGCAATCAACATTAGGTTGTGAATGGAAAACCTGGAAGCATGATGTGATGAAATGGTTTTCGACATCACCTTCCTTTTCTAGCAGTGAGGATATGCAGCAATTGACATTTGATGGGTTGTACCAAGTAAGCCTTCAGGTTGGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGGGCAGAGACACATTCTTCACTGGTGGAAACCAACTGTTCAGATCACCCAATTACTCTTGAAACTGACCCAGGTTTCTATAGAAATAAGGACATTTCGAGTACAGTATCAGTTGAGACTTCTACACACAAATATGTTAGGGAGGTACCTGTGGCAACTGATTTACCTAGTAATTTGACCAATAAATGGAAAGAAATTGTAGTTGATGCTGCTGATTCCAATATGTTGCATTGCAGTGGAATGGAATCAACACATATGAATGAAATGGTTGGTAAAAAAATTGTAGAACCTGATACTAAGAATCGACAATGTGTAGCTTATATTGAAGCCAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGAGGTATACTGCTGTGCGCATTTGTCATCTCGTCTTTCGGGCAGCTCAGTAAAAGCTGAAAAACCTGTTTCAGTTGATACTCCAATGTGTGGAGGTACAACTGTTCATCATACTAAATGTAAGCATCATGCCCTTCCTGGCTCTTCATTCTGTAAGAAACACCGTCCCCGTGCTGAAACAGATGAGACCTCAAATTTAACCAATAGTATGCTGAAGAGAAAACTTGAAGAAAAACAAATTGGTTCAGAAGTCTTGATCAGCAAAGACATGGTATTGATAAATGCTGAAAGTTCATTTCAAGTAGAACCGGTGCCAGCCATTGATGGTGATTCCTTCGTTGAAAGAAGCAACTTAGATGAGAGGCCCATCCTTTCTGGAAATGATCAGATTGCAATGGAGGCACTTCGCTGTATAGGCTCTCCTCCTTATGATAACAAGGACCCTTGTTTGGAGGCACCAAACCGATATTTCTTATATTGTGAAAAACACCTTCCAAGCTGGCTTAGACGTGCAAGAAATGGAAAGAGTAGGATAATATCAAAAGAAGTGTTCACAAAACTTTTAAGGGACTGCTGCTCATGGAAGCAAAAGGTGCACCTGCATAAAGCATGTGAGCTTTTTTACAGGCTATTGAAAAGCATTCTGTCACAAAAAAGCCCAGTTTCTAAGGAAGTTCAGTTCCTGCAGGCTCTAACTGAAGCCTCAAAAGATACTAGTGTTGGAGAATTCTTTACAAAGTTGGTTCGTAGTGAAAAGCAGAGAATCAAATTGATTTGGGAATTTGACGATGAAATAAATGTATCCTCACTTGTGGAAGGACCACCTCTCATTCCATCCACAGATAATGACAGCTATGATAATGAAAATGCCATTAAGTGTAAGATTTGCTATGCAAAATTTCTTGATGACCAAACTCTTGGCAACCATTGGATGGACAACCATAAGAAGGAAGCACAGTGGCTGTTCAGAGGTTATGCGTGTGCCATTTGTCTGGATTCTTTTACAAACAAGAAACTATTGGAAATCCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGTATTCCCTGTGGTAGTCATTTTGGAAATATGGAGCAGTTGTGGCTGCATGTTCTATCAGTTCACCCTGCAGAATTCAAGCCATCTAAAGCTCCTGAGCAGCAAACTTTGCCTACTTGTGAGGACTCTCCAGAAAAAATTGAGCAGGGAAATTCAGCTTCTGTGGAGAATAATTCTGACAATCTAGGTGGTTTGCGGAGGTTTGTTTGTCGGTTTTGTGGGTTAAAATTTAATTTACTACCTGACCTGGGTCGCCATCATCAAGCTTCTCATATGGGGCGCAAACTAGTTAGCAGCTGCTCTACAAAAAGGGGAGTTCGTCATTATACACATAGATTAAAATCTGGCAGACTTAGCCGACCTAGATTTAAAAATGGTTATGCAGCAGCAGCAGTTAAGATCAGGAATAGAGCTAATGCTAATTTAAAGAGAAACATTCAGGAAACAAAATCACTTGACATGGTGGAAACAACCATAAAAGATCATGTAACTGAGACAGCAAATGTTGGGAAGTTGGCAGAATATCAATGCTCGGCAGTTGCAAAGATTTTATTTTCCGAGATTCAGAAGACTAAACCCCGGCCTAACAATCTTGATATCTTATCCATTGGTCGTTCTGCATGCTGCAAAGTCAGTCTTAAAGCCTCACTAGAGGAGAAATATGGAATTTTGCCTGAAAGGCTCTATTTGAAGGCAGCAAAACTTTGCAGCGACAATAACATTCTGGTGAATTGGCACCAGGATGGGTTCATTTGTCCTAGGGGTTGTAAGGTTTTGAAAGACCAAAGGCATCTCTCTCCCTTAGCATCTCTTTCTAATGGTTTCCTAAAGCCGAATTCTGTAATTTTATCAGATCCTGCTAGTGACGAGTTGGAGGTGGATGAGTTTCACTACATCATTGATTCATACCATTTAAAAGTAGGATCCTTAGAAAAGGCCACAGTCTTGTGTGAGGACATAAGCTTTGGGAAGGAACCAATTCCTGTGATTTGTGTTGTCGATCAAGATATTATAAACTCTCTTAGGCATGGGTCCAATGAGGAAGACATAAATCTCTCTATGCCATGGGAGAGCTTTACCTATGTTACGAAGCCAATGCTTGATCAATCACTTGGTCTTGATTCTGAGAGTCTGCAACTGAGATGTGCTTGCTCATTTTCTGCCTGCTATCCTGAAACATGTGATCACGTCTACCTTTTTGACAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGAAGGTTCCCATATGACGAGAATGGTCGAATGATATTGGAGGAAGGTTACCTTGTGTATGAATGTAACCAGATGTGCAAATGCTATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATACGAGTTAAATTGGAAGTCTTTAAAACAGAGAAGAAGGGATGGGCAGTAAGGGCTGGTGAGGCTATCCTTCGTGGCACATTTGTGTGCGAGTACGTTGGAGAGGTTTTAGATAGGCAAGAGGCACACAACCGGCGCAAAAGATACGGCAATGAACACTGCAGTTATTTCTATGACATTGATGATCATGTGAATGATATGAGCAGATTGATTGAAGGACAGGCTCATTATGTCATTGATTCTTCTAAATTTGGAAATGTCTCGAGGTTCATCAATAACAGCTGCTCGCCTAATCTTGTGTGTTATCAAGTTCTTGTGGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTCTATGCAAATCGAGATATTGCTTTGGGTGAAGAATTGACATATAATTATCATTATGAGTTTCTGCCTGGAGAGGGATCTCCTTGCCTTTGTGGTTCTGCGAAGTGCCGGGGACGCCTGTACTAG 4509 0.4085 MEVLPCSGVQYAGGSDCSQPCSGTTFVNQGEPNFPESTDQAKLEDDRLNDSLKLEGAQIEGQDQMQQTVCELLTNIDCQCGGASCCDCQVEGQKEFYSFHDVEDDEINEPCLAFENSVSIVDTIESELPNDISEVELLFSEPTWLKGDAPVALWVKWRGNWQAGIKCARADWPLSTLKAKPTHGRKKYYVIFFPHTRNYSWADMLLVRSIYEFPQPIAYKTHEAGLKMVKDLTVARRFIMQKLAIGVISIVDQLHPNALLETARDVMVWKELAMETSRCNSYSDFGRMLLKLQNSIVKHYTNADWMQHSSYSWAARCQNANSAESIELLKEELFDSILWKDVNTLWDTPVQSTLGCEWKTWKHDVMKWFSTSPSFSSSEDMQQLTFDGLYQVSLQVGRKRPKLEVRRAETHSSLVETNCSDHPITLETDPGFYRNKDISSTVSVETSTHKYVREVPVATDLPSNLTNKWKEIVVDAADSNMLHCSGMESTHMNEMVGKKIVEPDTKNRQCVAYIEAKGRQCVRWANDGEVYCCAHLSSRLSGSSVKAEKPVSVDTPMCGGTTVHHTKCKHHALPGSSFCKKHRPRAETDETSNLTNSMLKRKLEEKQIGSEVLISKDMVLINAESSFQVEPVPAIDGDSFVERSNLDERPILSGNDQIAMEALRCIGSPPYDNKDPCLEAPNRYFLYCEKHLPSWLRRARNGKSRIISKEVFTKLLRDCCSWKQKVHLHKACELFYRLLKSILSQKSPVSKEVQFLQALTEASKDTSVGEFFTKLVRSEKQRIKLIWEFDDEINVSSLVEGPPLIPSTDNDSYDNENAIKCKICYAKFLDDQTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLEIHVQERHHVQFVEQCLLLQCIPCGSHFGNMEQLWLHVLSVHPAEFKPSKAPEQQTLPTCEDSPEKIEQGNSASVENNSDNLGGLRRFVCRFCGLKFNLLPDLGRHHQASHMGRKLVSSCSTKRGVRHYTHRLKSGRLSRPRFKNGYAAAAVKIRNRANANLKRNIQETKSLDMVETTIKDHVTETANVGKLAEYQCSAVAKILFSEIQKTKPRPNNLDILSIGRSACCKVSLKASLEEKYGILPERLYLKAAKLCSDNNILVNWHQDGFICPRGCKVLKDQRHLSPLASLSNGFLKPNSVILSDPASDELEVDEFHYIIDSYHLKVGSLEKATVLCEDISFGKEPIPVICVVDQDIINSLRHGSNEEDINLSMPWESFTYVTKPMLDQSLGLDSESLQLRCACSFSACYPETCDHVYLFDNDYDDAKDIFGKPMRGRFPYDENGRMILEEGYLVYECNQMCKCYKTCPNRILQNGIRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYVGEVLDRQEAHNRRKRYGNEHCSYFYDIDDHVNDMSRLIEGQAHYVIDSSKFGNVSRFINNSCSPNLVCYQVLVESMDCERAHIGLYANRDIALGEELTYNYHYEFLPGEGSPCLCGSAKCRGRLY 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01232 1502 Pfam SET domain 1358 1478 IPR001214 GO:0005515
Cca11g01232 1502 ProSitePatterns Zinc finger C2H2 type domain signature. 958 979 IPR013087 -
Cca11g01232 1502 ProSiteProfiles Zinc finger C2H2 type domain profile. 956 984 IPR013087 -
Cca11g01232 1502 Gene3D Classic Zinc Finger 806 879 - -
Cca11g01232 1502 SMART preset_2 1205 1331 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca11g01232 1502 ProSitePatterns Zinc finger C2H2 type domain signature. 889 910 IPR013087 -
Cca11g01232 1502 ProSitePatterns Zinc finger C2H2 type domain signature. 821 842 IPR013087 -
Cca11g01232 1502 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1502 - -
Cca11g01232 1502 Pfam Zinc finger C2H2-type, 3 repeats 855 980 IPR040689 -
Cca11g01232 1502 Pfam Pre-SET motif 1209 1339 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca11g01232 1502 Gene3D SET domain 1197 1502 IPR046341 -
Cca11g01232 1502 ProSiteProfiles Zinc finger C2H2 type domain profile. 853 876 IPR013087 -
Cca11g01232 1502 ProSiteProfiles Pre-SET domain profile. 1268 1344 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca11g01232 1502 ProSiteProfiles SET domain profile. 1347 1479 IPR001214 GO:0005515
Cca11g01232 1502 MobiDBLite consensus disorder prediction 920 946 - -
Cca11g01232 1502 MobiDBLite consensus disorder prediction 917 946 - -
Cca11g01232 1502 SUPERFAMILY SET domain 1197 1492 IPR046341 -
Cca11g01232 1502 SMART c2h2final6 887 910 IPR013087 -
Cca11g01232 1502 SMART c2h2final6 853 876 IPR013087 -
Cca11g01232 1502 SMART c2h2final6 956 979 IPR013087 -
Cca11g01232 1502 SMART c2h2final6 819 842 IPR013087 -
Cca11g01232 1502 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1502 - -
Cca11g01232 1502 SMART set_7 1347 1485 IPR001214 GO:0005515
Cca11g01232 1502 ProSiteProfiles Post-SET domain profile. 1486 1502 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01232 Cca-Chr11 31517479 31532381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01232 140 1501 C2H2 Transcription Factor Family AT2G23740 49.566 0.0 1312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca11g01232 Pre-SET 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01232 - - gmx:100808203 2654.4