Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01228 ATGGGAATAGCAACACCTTCCTCATCACTTCCTTCCATTCTCTCACACTCAAAGACACACCACCAACAACAACACCATTCGAATTCTATGTCCCAAGATTACCACCATCAAGGAATCTTCAGCTTCCCGAATGGGTTCGAGAGATCGGCTACCACGATGACTCACCAAGACCCTCAACAACAGCAGATTCGGAGGGACAAAGTGAGGGTGCAAGGCTTCGAGCCGCAACCGCCGTTGGTTCCCATCGAAGAAGACGAATCGGGAAGCCTCCCGGTGTACGAAACCGCGGGGATGTTATCGGAGATGTTCAACTTCCCTCCTGGCGCTGCGGAATTGTTGGaacagcagcaacaacaacaacaaacaaTGACGACGACGTTTCGTTCCACCGCTAGGACTGTGGCCAGTGGTGGCAGTGAGTGGTACGGAAACAGACAAGGGATATTAGCGGGGTTGGGACCGTTGGGAGATTCGAAGAATCATCATCATCATGGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAGCATAGGtcatcatcacaaccaccatcatcaccatcaGATGTCGAGCATTAATGCAGACTCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACTAGAtccccttctccccctccccctcctcctccttcctcatcttccacgctccACATGTTGCTTCCCACTTTCCCTCCTGCCTCAGGAGGCTCTTTTGGCCAATTCACATGGCTCCCCGACACGGTTCAAGAAGGAGGACCAAGTACTGTCGTGGAAGGCCCGGGCCAGACCCACGGGCATGGTCAGGGCCTTTCCTTGTCGCTGTCCTCTTCCTTGGAAGCCGCCAAGGCGGAGGAACTAAGGATGGGGGACAGTGGATTTTTGTACTACAATCAAGCAAGTGGAGGACCCTCTTCTTACAAGAGTCTTGGGGGTCATCACCACCAGGCATTGTTGGCGCAGAACCACCAGGGACATGTCGGGTTTGGGGGGGCGGCGGCGGCCACATCATCTTTGGGTGTGGTGAATGCGTTGAGGAATTCAAAGTATGTCAAGGCTGCTCAAGAGTTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGGCAGTTCAAGAAGAGCAAGTTCAACAGGCAACTATCAAACCCTAGTTCCAATCTTggaggcagtggcggtggtggcggtggcggtgCTTCTTCGTCTTCATCAAAGGATGTTCCTCCTTTGTCAGCCGCTGATAGAATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACTATGCTTGACGAGGTGGATCGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCATTCGACATGGTGATGGGTTTTGGCGCTGCGGTGCCATACACTGCGCTAGCGCAGAAAGCAATGTCTCGTCACTTTAGGTGTCTGAAGGATGCGATAACAGCACAGCTGAAGCATAGTTGTGAGGTGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGCTTGACAAAAGGAGAGACCCCAAGGCTCAAGTTGCTCGAACAAAGTTTGAGACAACAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTAAGAGCGTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCGAGGGTTCGATTGTGGAAACCGATGGTGGAAGACATGTACCAACAAGAGCTAAAAGAAGCCGAAGGAACAGAAGAAGAGAGAGAAAGGAACCAAAGCAGCAGCAACAACAGTAGCCACCAAGGGGCACAAACCCCAACGATCTCAaccaccgcatcgaccgcgacagcaccaccacctccgacaacaacatccacaccaccTACAGGCAAAAGATCCGATTCTGAAAGGGACCCTTCACTTGCACCAATAaataataataataataataataataataacaataaCACCAATAGGTCTGGCTTCTCGGAAACTCAACCCAACTCTTCCAGCACCGCCACCGCCTCTGAGGTGGTGCCACCGTCAGAGCTGCGGCCCATGGTTGCCGGTGAACCTTGCCGGCATGATAGCTTGGTCACGACGGAGTTTGGGACCGGTTCTGGTGCTTCTGACATTGGTTCCACTCTGATTAGGTTTGGGACCACCACAGGCGATGTGTCACTCACGCTAGGGCTACGTCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCTGTTAGGGGCTTTGGATCGATTTAA 2340 0.4679 MGIATPSSSLPSILSHSKTHHQQQHHSNSMSQDYHHQGIFSFPNGFERSATTMTHQDPQQQQIRRDKVRVQGFEPQPPLVPIEEDESGSLPVYETAGMLSEMFNFPPGAAELLEQQQQQQQTMTTTFRSTARTVASGGSEWYGNRQGILAGLGPLGDSKNHHHHGSVNSRDSSSSSIGHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPPPSSSSTLHMLLPTFPPASGGSFGQFTWLPDTVQEGGPSTVVEGPGQTHGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSLGGHHHQALLAQNHQGHVGFGGAAAATSSLGVVNALRNSKYVKAAQELLEEFCSVGRGQFKKSKFNRQLSNPSSNLGGSGGGGGGGASSSSSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCEVLGEKDGAGNSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGTEEERERNQSSSNNSSHQGAQTPTISTTASTATAPPPPTTTSTPPTGKRSDSERDPSLAPINNNNNNNNNNNNTNRSGFSETQPNSSSTATASEVVPPSELRPMVAGEPCRHDSLVTTEFGTGSGASDIGSTLIRFGTTTGDVSLTLGLRHAGNMPEKTPFSVRGFGSI 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01228 779 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 76 768 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 605 620 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 605 716 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 376 408 - -
Cca11g01228 779 SMART HOX_1 535 599 IPR001356 GO:0003677
Cca11g01228 779 MobiDBLite consensus disorder prediction 207 275 - -
Cca11g01228 779 SUPERFAMILY Homeodomain-like 537 602 IPR009057 -
Cca11g01228 779 Coils Coil 598 618 - -
Cca11g01228 779 SMART prehox3 342 483 IPR006563 -
Cca11g01228 779 MobiDBLite consensus disorder prediction 1 63 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 376 414 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 666 705 - -
Cca11g01228 779 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 768 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 1 59 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 210 225 - -
Cca11g01228 779 Pfam Homeobox KN domain 552 591 IPR008422 GO:0003677|GO:0006355
Cca11g01228 779 Pfam Associated with HOX 348 482 IPR006563 -
Cca11g01228 779 ProSiteProfiles 'Homeobox' domain profile. 532 595 IPR001356 GO:0003677
Cca11g01228 779 MobiDBLite consensus disorder prediction 621 646 - -
Cca11g01228 779 MobiDBLite consensus disorder prediction 152 192 - -
Cca11g01228 779 CDD homeodomain 535 596 IPR001356 GO:0003677
Cca11g01228 779 Gene3D - 538 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01228 Cca-Chr11 31417688 31425175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01228 740 779 Homeobox Transcription Factor Family AT2G23760 69.048 5.27e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca11g01228 POX 9.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01228 - - gmx:100807143 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01399 06 28870513 28878436 Cca11g01228 11 31417688 31425175 PCT