Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01225 ATGGGTTGGTTTACTAAATTGCTTAAGGGATCCAATCGTAAATATTCTGGAGGAAAGTATCATGGGAAATATGGCGATGGCAGAATTTCCGACAATCATGATAATTCAGCGGATGATTTGACGGATATTGAGAAAGAAGAAATTGATCGCGCAATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAAAAGTTATTGAGGATGATTCTGAATCTGAAGATGATGAACTGTGTCCACTtgatgatgaggaagatgaatgtgttggtgaagttcaggaagatgaagatgaccatcatgCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGACCATTAGTTCTCCTCCTCGATCTGACACTGATTCCTTATTTCAACCTTTTGCGCACTTATTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCAATGGAAGATTTTTGAGTTGCATGGGAGGTTTCTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCATGCTATAAGGAGTTGCATCATCCGAGATGCGATGTTTGCAAGAACTTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATTTGTTGCTTGATGATGGTCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCCCTCTATGTCGAAATACAAGAATTTTATGAAGGCTTACATATGAAGATAGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAGGCGCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTATGCTTGTCTGAAGAGCAAACTATCCCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGTTACCAGCTCATAGACATGATAACTGAGCCTTTTAGGCTGATCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCTCATGAAATGATGCATGCATGGCTTAGGCTTAAAGGCTATGGCAATTTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCTGGCTCTGGGAATGATGGTGcatcatcatcatcgtcatcatcatcttcgtcctcttcatcaccttcatcctcttcatcatcaAAGAAGGGTAAACGTTCTGACTTTGAGAAGAAACTTGGTGAGTATTTCAAACACCAGATTGAGTCAGATAGCTCACCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGCTTAAGTATGGACTTAGAAGCACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGA 1590 0.3918 MGWFTKLLKGSNRKYSGGKYHGKYGDGRISDNHDNSADDLTDIEKEEIDRAIALSLSEADPKGKKVIEDDSESEDDELCPLDDEEDECVGEVQEDEDDHHAKIQQDEDKHLDEVQLEEDEQLARAIQESLTISSPPRSDTDSLFQPFAHLFPPVYRICAGCNAEIGNGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGNDGASSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGEYFKHQIESDSSPAYGDGFREGNQAVLKYGLRSTLDHIRMTGSFPY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01225 529 MobiDBLite consensus disorder prediction 447 471 - -
Cca11g01225 529 MobiDBLite consensus disorder prediction 59 82 - -
Cca11g01225 529 Pfam Protein DA1 307 524 IPR022087 -
Cca11g01225 529 SMART uim 43 62 IPR003903 -
Cca11g01225 529 SMART uim 117 136 IPR003903 -
Cca11g01225 529 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Cca11g01225 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Cca11g01225 529 MobiDBLite consensus disorder prediction 19 39 - -
Cca11g01225 529 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 529 - -
Cca11g01225 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
Cca11g01225 529 CDD LIM_DA1 158 210 - -
Cca11g01225 529 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Cca11g01225 529 SMART lim_4 157 209 IPR001781 -
Cca11g01225 529 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Cca11g01225 529 Gene3D Cysteine Rich Protein 154 215 - -
Cca11g01225 529 MobiDBLite consensus disorder prediction 9 39 - -
Cca11g01225 529 MobiDBLite consensus disorder prediction 447 477 - -
Cca11g01225 529 PANTHER PROTEIN DA1-RELATED 2 1 529 IPR045218 -
Cca11g01225 529 Pfam LIM domain 158 212 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01225 Cca-Chr11 31268977 31275486 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca11g01225 DA1-like 2.3e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01225 - - gmx:100806605 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01396 06 28835434 28840046 Cca11g01225 11 31268977 31275486 PCT