Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01224 atgttcttaccggagattggtggtagggacaatctgctgggtaagatcggtgagcctccttcactgTTGTGGAGCGAGGGATGCTCATCATGTGCTTCCAAAACTGATCTATTTCCcttctccttcttacttctgtctttctttctCCCTGCTACAAATCCAAAATCCACCAAATCCCGGCGCCAAACAGCCGAATTAACCTCCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTATATGTCCACGAAGCTTATCTCAGGCACGAGCCTTCAGCTCTTGAGGCGTTACGATCACCGACCAGAAAGTCACAAAGCACAGTTGCTCGATGATGATGGTCCCTCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGTGACATTTTCAAGGAGGATACTGTAGAGTATGTTTTGGCCCTGATAGATGAAATGCTTGCAGCAAACCCGAAGAGAGCAAGACTGTTTCATGACAGTGCCCTTGCGGATGAAGATACTTATGAGCCTTTCCTAAGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATTGTTAGTGTCAGGCCAAAAAGTCAGAATGGTACTGTGTCAAATGGAGAAGCATCAAATGGAAAGAAGTCTCTTACAACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTCTGTGAACAGTTAAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCCTAGCAACACTACTCAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCGGATGGGGTCAAGTTACTTGTGCCATTGATTTCACCAGCATCCACTCAACAATCTATTCAGCTTCTTTATGAAACATGTCTTTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAGTATTTGGCTACTTCAAGGACCCTTCCACGACTTATTGATGTTGTTAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTTGTTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGCCACAAGTTGTCCAGAGTTTAAAAGCCCAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTGAATTCCCTGGAAGAAGGGCTTAAGGATAATATTAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGCGAGAAAATATAACCAACTTTGAAGAAAGTGATTTCCAGATCCTAAGGGTCCTAATAACAATTTTGGACACCTCCAATGATCCTAGATCTCTGGCTGTTGCTTGCTTTGACCTTTCACAGTTTATCCAGATCCATCCTGCAGGACGTATCATTGTGACGGACCTTAAGGCCAAGGAACGAGTGATGAAACTTATGAACCATGAAAATGCTGAAGTTACTAAAAATGCACTTCTCTGCATCCAGCGGCTTCTCTTAGGTGCAAAGTATGCAAGCTTCTTGCAGGTTTAA 1524 0.4035 MFLPEIGGRDNLLGKIGEPPSLLWSEGCSSCASKTDLFPFSFLLLSFFLPATNPKSTKSRRQTAELTSEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRPESHKAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSALADEDTYEPFLRNWFIQEKSCKILALIVSVRPKSQNGTVSNGEASNGKKSLTTIDDVLIGLVKWLCEQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDPIFWRENITNFEESDFQILRVLITILDTSNDPRSLAVACFDLSQFIQIHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLLLGAKYASFLQV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01224 507 Pfam V-ATPase subunit H 67 378 IPR004908 GO:0000221|GO:0046961|GO:1902600
Cca11g01224 507 Gene3D - 398 499 IPR038497 -
Cca11g01224 507 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 63 506 IPR004908 GO:0000221|GO:0046961|GO:1902600
Cca11g01224 507 PIRSF V-ATP_synth_H 52 506 IPR004908 GO:0000221|GO:0046961|GO:1902600
Cca11g01224 507 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 63 506 - -
Cca11g01224 507 SMART arm_5 296 337 IPR000225 GO:0005515
Cca11g01224 507 SMART arm_5 457 497 IPR000225 GO:0005515
Cca11g01224 507 SMART arm_5 250 295 IPR000225 GO:0005515
Cca11g01224 507 Pfam V-ATPase subunit H 384 497 IPR011987 GO:0000221|GO:1902600
Cca11g01224 507 Gene3D - 58 386 IPR011989 -
Cca11g01224 507 SUPERFAMILY ARM repeat 68 497 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01224 64 506 Primary Pumps ATPases(2) AT3G42050 78.795 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01224 K02144 - gmx:100788723 835.484