Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01214 ATGGTTCAGAGTTGGAGGCCTTCCTTCACCATTATTACAACCCACACTCCTAAAATTGTAGCAGGGGTGTGGATCCTTGGACTTTCTATCGAATTGTTCAAAACAAGGTTCCTCTACAGGGTTGGGAGTAGATTAGGGACTATGCTTAAGATTGATAAACTTACTTCTATTCAATATCATGGAAGGTTTGTCAGGATATGTGTAAAAATTGTTTTTGGAAGAATGTTGGTCTCTCAAATTAATGCTCTTGGGCATATTCTAAAATTAGAGTATAAGGGTCTTCATACGATTTGCTTCAAATGTGGAAAATATGGTCACAAACAGGATAGTTGTACTGATCCAATGGTGGAACCTGCTGTTGTTGCAGCCGAGTCAGCTGCCACGATTCCAGGCAAGCCAATGGATATCATGACTGCCTTACAACTTGTCCTCAGAAAATCTCTAGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGCAGCAAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGACTGTGACCAACCTGACTATGTTAAACTTGTTAAGGCCCTTTGCGCAGAGCACAATGTTAGCCTATGGATGGTTCCTAGTGCAAAGACCCTTGGAGAATGGGCTGGTGTAAGTGTCATTGACAATGAACCTTAA 663 0.4223 MVQSWRPSFTIITTHTPKIVAGVWILGLSIELFKTRFLYRVGSRLGTMLKIDKLTSIQYHGRFVRICVKIVFGRMLVSQINALGHILKLEYKGLHTICFKCGKYGHKQDSCTDPMVEPAVVAAESAATIPGKPMDIMTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLWMVPSAKTLGEWAGVSVIDNEP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01214 220 SUPERFAMILY L30e-like 132 215 IPR029064 -
Cca11g01214 220 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 139 215 IPR004038 -
Cca11g01214 220 ProSitePatterns Ribosomal protein S12e signature. 139 157 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01214 220 PANTHER 40S RIBOSOMAL PROTEIN S12 117 219 - -
Cca11g01214 220 PANTHER 40S RIBOSOMAL PROTEIN S12 117 219 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01214 220 Gene3D - 121 220 IPR029064 -
Cca11g01214 220 PRINTS Ribosomal protein S12E family signature 157 173 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01214 220 PRINTS Ribosomal protein S12E family signature 143 156 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01214 220 PRINTS Ribosomal protein S12E family signature 198 219 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01214 220 ProSiteProfiles Zinc finger CCHC-type profile. 98 113 IPR001878 GO:0003676|GO:0008270
Cca11g01214 220 SUPERFAMILY Retrovirus zinc finger-like domains 95 114 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01214 Cca-Chr11 30792234 30795037 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01214 129 219 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 71.429 1.11e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01214 K02951 - gmx:100305687 176.792