Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01212 ATGTGGATATTGTCCGCTTTGGCCGCAGCCCTCACGGTTTTGCTTCTGGCAATGGCACGCATGCCACCCCAAAACGCGTCCACACAAGGAAGAAAATCTCTAGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGCAGCAAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGACTGTGGCCAACCTGGCTATGTTAAACTTGTTAAGGCCCTTTGCGCAGAGCACAATGTTAGCCTATGGATGGTTCCTAGTGCAAAGACCCTTGGAGAATGGGCTGGTATGCTTGAGCATAAGATTAAACGTGGGTGGGCAAATACAGGGTTGTTCAGATTGTCAACTTGTCTCAAGATTAATCTTGTTCAATTTGCGTCTGAAGAAGATTGTAAACATGCCTTATTCAAAGGGAATCATGTTGGAAAAAGCCATGTCAAGGAGAAGAAGTTGGATTGGACTTTAGTGAAGAAAGATGGCAATTTCAGAAGACTCGTGTTGAGCGCATATACTAGCTTGCTTAGTACATTGGATCAGCCTGAGATGTTGAAGAATTGGCCGTGCATTGGGCATATCGTTTACTTCCAAGCCCCGTCCTCAGCAACTGGTTTCGACACAATCGTCTTCAGGAGCAGGAAGGAGAGTTGTTTTTCTAGATCAACAAGGAAAATGTCGGGGGAAGAACCTGCCGTTGTTGCAGCCGAGTCAGCTGCCGCGATTCCAGGCGAGCCAATGGATATCATGACTGCCTTACAACTTGTCCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGCAGCAAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGGGGTTTTCCTTTCCATCATTGTTTCTAATTGGTTTTCTTCCATCTTCACTTATATGATGTATTTTGCTAATCTTCTCATGAAAATGAGTTGCTAA 978 0.4571 MWILSALAAALTVLLLAMARMPPQNASTQGRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCGQPGYVKLVKALCAEHNVSLWMVPSAKTLGEWAGMLEHKIKRGWANTGLFRLSTCLKINLVQFASEEDCKHALFKGNHVGKSHVKEKKLDWTLVKKDGNFRRLVLSAYTSLLSTLDQPEMLKNWPCIGHIVYFQAPSSATGFDTIVFRSRKESCFSRSTRKMSGEEPAVVAAESAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPGVFLSIIVSNWFSSIFTYMMYFANLLMKMSC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01212 325 ProSitePatterns Ribosomal protein S12e signature. 252 270 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01212 325 PRINTS Ribosomal protein S12E family signature 29 42 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01212 325 PRINTS Ribosomal protein S12E family signature 43 59 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01212 325 PRINTS Ribosomal protein S12E family signature 84 105 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01212 325 SUPERFAMILY L30e-like 246 300 IPR029064 -
Cca11g01212 325 Gene3D - 29 138 IPR029064 -
Cca11g01212 325 PANTHER 40S RIBOSOMAL PROTEIN S12 226 295 - -
Cca11g01212 325 PANTHER 40S RIBOSOMAL PROTEIN S12 31 101 - -
Cca11g01212 325 PANTHER 40S RIBOSOMAL PROTEIN S12 226 295 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01212 325 PANTHER 40S RIBOSOMAL PROTEIN S12 31 101 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g01212 325 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 31 99 IPR004038 -
Cca11g01212 325 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 252 294 IPR004038 -
Cca11g01212 325 Gene3D - 234 304 IPR029064 -
Cca11g01212 325 SUPERFAMILY L30e-like 30 99 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01212 Cca-Chr11 30769320 30778502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01212 31 99 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 76.812 1.29e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01212 K02951 - gmx:100500093 129.798