Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01211 ATGAATCATGCACCTATCGAAGACCACATGATGCTCATCTCACAGCTATACCCCGATGCATTCACTCAAATGACTCCTCAACAAGGGGAAAACAAGCCAAAACGCAGGCGAAAAAAGAACAAAGGTGGAGAAAACGGGGGTGTGGGCAGCACCAAGAAAAGAAAGCTTAGCCCGGAGCAACTAAGTTTTCTTGAGCAAAATTTCGTCGATGAACATAAACTTGAATCTCAAAGGAAGGATCGACTTGCATTGGAGCTTGGTTTGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAATAGACGATCTCGTTGGAAGAACAAAAAATTGGAGGAAGAGTACTCCAAGCTTAAGAATGCTCACGAAACCACTATGCTTGAGAAATGCCACCTTGAGACCCAGGTGTTGAAGCTCCAGGAGCAGCTTTTGGAGGCAAAGAAGGAGATTCAGCAGCTCCTAGAACGCGGTGATAGAGCCCCAAGTAACAGCTCAAGTTCCTCGCACTCACTATCACAGTCAATGGATCAAGTTGTGAACCCTCCATTTCTTGGAGAGTTTAGCGTGGAAGAATATGGTGATGGTGATGTGTTCTGCATTCCTGAGACCCATTACATCGATGGAATGGAATGGCTTAATCTATACATctccatcaaagacggtccatcaaagacgATGGATGAGTTtaaagaaacgtcttcaacatgtcctgtcctcctttccatggattatgactttagttccagtgaggatactacaaaattggatcatgctggtgatgaaagtgaaaattttacatcctctgatgatgatactaacaaagaagatggcagtaatgctccagtgaagaataaacgaatggatgatgatttaagtatttcaaaattgaaatataagaaacaaagggtttcaaaaccgaatttgaaggaggagaacattACAGGTGCAAGGGTTCAATATTGGACTATAGGAATTACGAGCTTTAACACAGGAAAACACAACAGAAATCATCCTTCAATGGTGTCTCAAAGCAACAAAAAGGAAAACAAAAAAAATACCTCTCAGACAGATTTGGGTCAAATGTCAGCACGAAAGAAGAAAGTACCCAAAGTGAAGCAGCTGATAAAAATTTCTTCTAGCTACATGGAAAGTGTACAAAATGATGTTTCTAAGGACAAAATTTCAGCAACTCCAATTGAAATTCCTGAGAAGAAACAAACAAATGGATTAGAAGACACATTTACACACACCCAATCAAAACGAGATGATCGAGTCTCACCTGTTAGCATACCAATGAATGGAACTGAAATTATTGGAAAATTCAGCACACCTGTCGATGATTCAACAACAGGAAAAAAATATGACAACACAGAAAAAGTTGCTGGGAAACAAGACAAACTCAAAAAAAGGTTGTTTTCATTCACTATAGCAGGAAAAGACAATGGTTTATTGTCTAATTTGGAGCCTCTACATAATACACATTACGAAGGTCTAAATAAGGCAGTAAAAATACCACAGTGGATACCTATGATATTCAATATTCTGAAAAACATGATAGTGGATGATATTCAATCAGTAGTTGCTGCTTATATATTTGGTACAAATAAGGATGATGACAAAAATGGGAGAGAAATAATAATCAGAACAGATGGGCCGCGAGAAATAGTCGGCTACAGAGACAATTTGAAGACACTAATACCAAGAGAGTGGATCAAGATGTTCTTATCTTACTTGCTTCCATGCTCACTGAGATTGAAAGATCAACTCCTAACTATACTGAAAATTGGTTGGACAACTACACCAAATGTTGTCAGGGACTTTTATCAATTCGAATTCATGGGAAAAATTGATTATTTGTCCAAGATATTTATTCCGATGAATGACATGAATATGCATTGGTATCTCATGCTTATTGATCTGAACATGCAAAATCTGATTATGTTGGATTCTTGCCCAAACAACAAAAGAAATGCTCATTGA 1974 0.3343 MNHAPIEDHMMLISQLYPDAFTQMTPQQGENKPKRRRKKNKGGENGGVGSTKKRKLSPEQLSFLEQNFVDEHKLESQRKDRLALELGLDPRQVAVWFQNRRSRWKNKKLEEEYSKLKNAHETTMLEKCHLETQVLKLQEQLLEAKKEIQQLLERGDRAPSNSSSSSHSLSQSMDQVVNPPFLGEFSVEEYGDGDVFCIPETHYIDGMEWLNLYISIKDGPSKTMDEFKETSSTCPVLLSMDYDFSSSEDTTKLDHAGDESENFTSSDDDTNKEDGSNAPVKNKRMDDDLSISKLKYKKQRVSKPNLKEENITGARVQYWTIGITSFNTGKHNRNHPSMVSQSNKKENKKNTSQTDLGQMSARKKKVPKVKQLIKISSSYMESVQNDVSKDKISATPIEIPEKKQTNGLEDTFTHTQSKRDDRVSPVSIPMNGTEIIGKFSTPVDDSTTGKKYDNTEKVAGKQDKLKKRLFSFTIAGKDNGLLSNLEPLHNTHYEGLNKAVKIPQWIPMIFNILKNMIVDDIQSVVAAYIFGTNKDDDKNGREIIIRTDGPREIVGYRDNLKTLIPREWIKMFLSYLLPCSLRLKDQLLTILKIGWTTTPNVVRDFYQFEFMGKIDYLSKIFIPMNDMNMHWYLMLIDLNMQNLIMLDSCPNNKRNAH 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01211 657 Gene3D - 43 116 - -
Cca11g01211 657 SUPERFAMILY Homeodomain-like 50 116 IPR009057 -
Cca11g01211 657 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Cca11g01211 657 Coils Coil 134 154 - -
Cca11g01211 657 MobiDBLite consensus disorder prediction 155 173 - -
Cca11g01211 657 Pfam Ulp1 protease family, C-terminal catalytic domain 618 654 IPR003653 GO:0006508|GO:0008234
Cca11g01211 657 MobiDBLite consensus disorder prediction 329 359 - -
Cca11g01211 657 CDD homeodomain 52 108 IPR001356 GO:0003677
Cca11g01211 657 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Cca11g01211 657 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 215 IPR045224 GO:0003700
Cca11g01211 657 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 215 - -
Cca11g01211 657 Coils Coil 99 126 - -
Cca11g01211 657 SMART HOX_1 50 111 IPR001356 GO:0003677
Cca11g01211 657 Pfam Homeodomain 52 106 IPR001356 GO:0003677
Cca11g01211 657 Gene3D Adenoviral Proteinase; Chain A 537 657 - -
Cca11g01211 657 MobiDBLite consensus disorder prediction 154 173 - -
Cca11g01211 657 MobiDBLite consensus disorder prediction 24 59 - -
Cca11g01211 657 MobiDBLite consensus disorder prediction 329 368 - -
Cca11g01211 657 MobiDBLite consensus disorder prediction 248 291 - -
Cca11g01211 657 SUPERFAMILY Cysteine proteinases 554 655 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01211 Cca-Chr11 30701142 30710668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01211 1 214 Homeobox Transcription Factor Family AT2G18550 51.570 1.16e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca11g01211 Peptidase_C48 7.6e-05 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01211 K09338 - ccaj:114916725 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01376 06 28612265 28614227 Cca11g01211 11 30701142 30710668 PCT