Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01210 ATGCAAGAACAATGTCGATTCTTCTCACTCTCAGACCCTCAGGTCATCCTCCGTCTCTCACTACCATTCGGTGGCTCCTCACAGAACAATGGACATAGGGCAAGTAACGATGATGCTGATGCTGCTAAACTAGACGATGATTTTGTCTTCGATATAGACCCAACATGGCTAGTGGATACCCGAAAACTAATAGTTGGCGAACTGATTGCAGAAGGGTCACGTGCCATTGTCTACAAAGGATGGTATGAGTTGAATCCTGTATCTATAAAGGTTTTGCTTCCAATGCGAACATCCGATGCCACTTCTGAATGTAAGGCAAGATTTCAGCGGGAGGTGAACTTGTTATCTAAGATTAAACATAAAAATATTATAAAGTTTATTGGCGCCTCGGTGGAACCATCAATGATGATAATTACAGAACGCGTGGAAGGTTGTTCACTTATGAGATACCTAGAGAGCATTTCTCCAAGTACTCTAAGTTTAGAGCAATGCATAAGTTTTGCTTTGGATATTTCTAGAGTCATGGAGTATTTGCATGCAAATGGCATTATTCACCGCGACCTGAAGCTTGGTAATATGTTTCTTGCCAAAGACAACATGGAAATTTTACTTACAAATTTTGACATAGCTAGAGAGGTGATAAGTGGTGAAATGACATCTGAAGCCGGTACATATCGATATATGGCTCCTGAGTTATTCAGCAAAGATCCACTTCTAAAGGGAGCAAAGAAATGCTATGATCACAAGGCAGACGTCTACAGCTTCGCAATGGCTCTATGGGCGTTAATAAAAAACCAAACTCCATTTAAAGGAAGGAGTCAATTGATTGCAGCATATGCTACTGTATTAAACATGAGGCCTAGTGTGGAAGAGTTTCCAAAAGATCTACTTCCCCTATTGCAGTCATGTTGGGAAGAAGATCCAAATCTCAGACCAGAATTCTCAGAGATCACCCAAACCCTTGCAGAATTTCTCCACAACTGCCTAGGGATAACACCTGAGGAACAAGAGTGTCCAACTACAAGTGTGCAGGAACCTATCCCTTATTGTGCAGAAGACAACTCCAAACATGTGCATGAGGCACAGAGTCAGAATACCAATGTCTCCACAATGGGACAATATCAGAGCATATCACAAACCCCTAGTCCAGTCTTAGTCCAAAGAAAGACAAAAAAAAGTTTTAGGAAGAAGTGCAAGTGTTTATGGTCATGTTTCAGCAAATGCTTTGACATTATTTTACATGCATGCGTGCATCATGCAATTGGTGAGTTGCATACATGA 1281 0.4114 MQEQCRFFSLSDPQVILRLSLPFGGSSQNNGHRASNDDADAAKLDDDFVFDIDPTWLVDTRKLIVGELIAEGSRAIVYKGWYELNPVSIKVLLPMRTSDATSECKARFQREVNLLSKIKHKNIIKFIGASVEPSMMIITERVEGCSLMRYLESISPSTLSLEQCISFALDISRVMEYLHANGIIHRDLKLGNMFLAKDNMEILLTNFDIAREVISGEMTSEAGTYRYMAPELFSKDPLLKGAKKCYDHKADVYSFAMALWALIKNQTPFKGRSQLIAAYATVLNMRPSVEEFPKDLLPLLQSCWEEDPNLRPEFSEITQTLAEFLHNCLGITPEEQECPTTSVQEPIPYCAEDNSKHVHEAQSQNTNVSTMGQYQSISQTPSPVLVQRKTKKSFRKKCKCLWSCFSKCFDIILHACVHHAIGELHT 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01210 426 SUPERFAMILY Protein kinase-like (PK-like) 55 342 IPR011009 -
Cca11g01210 426 ProSiteProfiles Protein kinase domain profile. 63 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01210 426 Gene3D Transferase(Phosphotransferase) domain 1 144 372 - -
Cca11g01210 426 Pfam Protein tyrosine and serine/threonine kinase 65 321 IPR001245 GO:0004672|GO:0006468
Cca11g01210 426 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 27 362 - -
Cca11g01210 426 SMART serkin_6 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01210 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Cca11g01210 426 PRINTS Tyrosine kinase catalytic domain signature 250 272 IPR001245 GO:0004672|GO:0006468
Cca11g01210 426 PRINTS Tyrosine kinase catalytic domain signature 177 195 IPR001245 GO:0004672|GO:0006468
Cca11g01210 426 PRINTS Tyrosine kinase catalytic domain signature 292 314 IPR001245 GO:0004672|GO:0006468
Cca11g01210 426 PRINTS Tyrosine kinase catalytic domain signature 139 152 IPR001245 GO:0004672|GO:0006468
Cca11g01210 426 Gene3D Phosphorylase Kinase; domain 1 51 143 - -
Cca11g01210 426 PANTHER SERINE-THREONINE PROTEIN KINASE 27 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01210 Cca-Chr11 30572162 30582847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01210 45 327 MAP Kinase Kinase Kinase AT5G66710 52.465 3.38e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca11g01210 PK_Tyr_Ser-Thr 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01210 - K04427 ccaj:109787878 684.485