Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01207 ATGAGAGTTCCCTCATCCCCACAACTCACCCAAAACCTCCTCCTCCACTCTTCTCCCAACACAAGCACAACCACCAACCCAACCACCTTCACCTACGAACCCACCTCAGTCCTCGACCTCGGCCGCAGCCCCAGCCCAGAAAAGAAACCCTCTGCCCCAAGACCAGACCCCcaacacaacaacaacaacaacaacaacaccaacaacCTCGACCTGGACGAACATGTCTTGCCCAATTTGGATTGGTGGGATTCCATCATGAAGGACCTATCCTTGCCCGAAGAGTCCCCCACGCCTCTTTTGAAAAATAATAACATAAACGCATGCATCCCTGATTTCCCACCCTTCGACCACCCCCCAGACTTCACAACCTCTCTCTCGGAAATATACACGAACCAAAACCTACCCTACACCTACACCTTGGAGCAATCCTTTCACGACCTCAACCAGCACAACAACAACTGGGATTTCATCGAAGAGCTCATACGCGCCGCCGATTGCTTCGACACAAGCCACTTCCAAGTGGCGCAAGCCATACTGGAGCGGCTAAACCAACGCCTCACACGCTCCCCCATGGCCAAGCCGCTCCACCGAGCCGCGTTTCACTTCAAAGACGCACTTCACTCCATTCTCTCCGGTTCCAACAGGACCCGACTCTCCTCCATGCTCGAGATCGTTCAAACAATCAAAACCTACAAGGCCTTTTCTGGAATTTCACCCATTCCCATGTTTTCAATCTTCACCACCAACCAGGCCTTGCTCGAAACCCTAAACGGATCCTCCTTTGTACACGTCATCGACTTCGAAATCGGCCTCGGGATCCAATACGCCTCTCTCATGAAGGAGATCGCCGAGAAGGCCACCGGCGCCTCCACGCTCCTCCACATCACGGCCGTCGTGCCGGAGGAAAGCGCCGTCGAGAACCGCCTCGTCCGCGAGAATCTCAACCAGTTCGCGCACGACCTCGGGATCCGCGTCCAGGTCGATTTCGTGCCGCTGAGGACGTTCGAGACGGTGTCGTTCAAGGCGGTCAGGTTTCTCGACGGGGAGAAGATCGCGGTGCTGCTCACGCCGGCTATCTTCTCCCGCCTCGGCGCCGGCGGCGCCGCGTTCCTCGCCGAGGTGAGGAGGACGGCGCCGGGAGTGGTGGTGTTCGTGGACGGCGAGGGGTGGACGGAGTCCTCGGCGGCGGCGTCGTTCCGGCGCGGCGTGGTGAACAGCCTGGAGTTTTACTCGATGATGCTGGAGTCGCTGGACgcggcggtggcggcggggggaggcggcgAGTGGGTGAGGAGGATCGAGATGCTGCTGCTGCGGCCGAAGATCTTCGCGGCGGTGGAGGGCGCGCGGCGGAGGACGCCGCCGTGGAGGGAGGCATTCTACGGCGCCGGAATGAGGCCGGTGCAGTTGAGCCAGTTCGCGGATTATCAGGCCGAGTGCTTGCTGGCCAAGGTGCAAATCAGAGGCTTCCACGTGGACAAACGCCATGCTGAGTTGGTGCTTTGCTGGCACGAACGACCCATGGTTGCCACGTCAGCTTGGCGGTGTTAG 1554 0.5656 MRVPSSPQLTQNLLLHSSPNTSTTTNPTTFTYEPTSVLDLGRSPSPEKKPSAPRPDPQHNNNNNNNTNNLDLDEHVLPNLDWWDSIMKDLSLPEESPTPLLKNNNINACIPDFPPFDHPPDFTTSLSEIYTNQNLPYTYTLEQSFHDLNQHNNNWDFIEELIRAADCFDTSHFQVAQAILERLNQRLTRSPMAKPLHRAAFHFKDALHSILSGSNRTRLSSMLEIVQTIKTYKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKATGASTLLHITAVVPEESAVENRLVRENLNQFAHDLGIRVQVDFVPLRTFETVSFKAVRFLDGEKIAVLLTPAIFSRLGAGGAAFLAEVRRTAPGVVVFVDGEGWTESSAAASFRRGVVNSLEFYSMMLESLDAAVAAGGGGEWVRRIEMLLLRPKIFAAVEGARRRTPPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVDKRHAELVLCWHERPMVATSAWRC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01207 517 MobiDBLite consensus disorder prediction 1 72 - -
Cca11g01207 517 Pfam GRAS domain family 158 516 IPR005202 -
Cca11g01207 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 516 IPR005202 -
Cca11g01207 517 MobiDBLite consensus disorder prediction 1 38 - -
Cca11g01207 517 ProSiteProfiles GRAS family profile. 148 516 IPR005202 -
Cca11g01207 517 MobiDBLite consensus disorder prediction 55 72 - -
Cca11g01207 517 PANTHER SCARECROW-LIKE PROTEIN 15 20 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01207 Cca-Chr11 30428488 30430800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01207 69 516 GRAS Transcription Factor Family AT4G36710 54.334 5.38e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca11g01207 GRAS 3.1e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01207 - - gmx:100785004 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01374 06 28588637 28590736 Cca11g01207 11 30428488 30430800 PCT