Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01204 ATGGACAACGCTTCCACAGCTTCAGGGGACGCTAGCGTCTCTTCTTCCGGCAACCAAACAAAAGCCGCCACCAAGAAAAAACGAAACCTCCCTGGGATGCCGGATCCGGAGGCAGAGGTGATTGCTCTGTCGCCGAAGACGCTGTTAGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAGGGGTTCCAGAGGGACCAGAATCTGCAGCTTCACCGTCGCGGCCACAACTTGCCGTGGAAGCTGCGGCAGAGGTCGAGCAAGGAGGTGAGAAAACGAGTGTACGTGTGTCCCGAGCGCACGTGCGTGCACCACGACCCTTCTCGGGCCCTTGGGGACTTGACCGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTACGCGGTTCACTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGGGAGTATAAGTGCGATTGCGGAACCGTTTTCTCTAGGAGGGATAGCTTCATCACGCATAGGGCGTTTTGCGATGCGTTGGCGGAGGAGAGTTCCAGATCTCACACTGTTGTCAAGCCGGATTCGGAGAATGAATCTAAGGTTTTAAATGGTGATTCGCCGCCGACGGAGGCGACGGTGGTGGCTTCTGCTAGTACTGCTCAGTCGAATAGTGTCGTGTCCTCTGGTTTGCAGACGCAGAACCTAGAGTTGCCAGAAAATAATAATCCTATTGAGGAGCCAGAAGCTGTTACTACTACCTTAAGTGGGAGCTGTGGCAATAGCACCTGCTCAACCAGCAATGGCGGTGCTACCAGCAATAAAAGTAGCGTGTTTGCAAGTTTATTTGCTTCTTCAACACATTCTGGGACCCTACAATCTCAAACACCAGCATTCAATGACTTAATTAGAGCAACAGGGCGTGCAGATCACCCTGCAGCAGAAATCTCAGCTCCATCATCATCAGAGGCCATATCTCTTTGCCTCTCCACCACCAACGCCTCACCAATTTTCACGCCGCCGCCGATGCCACCGCCGGTCATGTCAGCCACGGCATTGCTGCAGAAGGCTGCTCAAATGGGTGCTACAGCCACAAACGCCTCTCTGCTTCGcagcttcggcatcatgtcctcatcttcagcttcagcctcTTCAGATGGCCTACAATGGGGCCAGCAGCAAGTGGAACCTGAGAGTAGCTCTGGACTAAAGGAATTGATGATGGGAACAGCACCCTCAATGTTTGGTCCAAAACACACCACTCTTGATTTTCTAGGATTGGGGATGGCTGCGGGTGGCACTTCTGGTGGAGGCTTATCAGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTACTGCAGCATTTGGTAATGGAGAATTTTCTGGCAAAGATATTGGAAGGAGCTCTTGA 1413 0.5117 MDNASTASGDASVSSSGNQTKAATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPERTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVHSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESSRSHTVVKPDSENESKVLNGDSPPTEATVVASASTAQSNSVVSSGLQTQNLELPENNNPIEEPEAVTTTLSGSCGNSTCSTSNGGATSNKSSVFASLFASSTHSGTLQSQTPAFNDLIRATGRADHPAAEISAPSSSEAISLCLSTTNASPIFTPPPMPPPVMSATALLQKAAQMGATATNASLLRSFGIMSSSSASASSDGLQWGQQQVEPESSSGLKELMMGTAPSMFGPKHTTLDFLGLGMAAGGTSGGGLSALITSIGGGLDVTAAFGNGEFSGKDIGRSS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01204 470 MobiDBLite consensus disorder prediction 188 211 - -
Cca11g01204 470 MobiDBLite consensus disorder prediction 1 25 - -
Cca11g01204 470 MobiDBLite consensus disorder prediction 1 36 - -
Cca11g01204 470 SMART c2h2final6 95 125 IPR013087 -
Cca11g01204 470 SMART c2h2final6 54 76 IPR013087 -
Cca11g01204 470 SMART c2h2final6 130 150 IPR013087 -
Cca11g01204 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Cca11g01204 470 Gene3D Classic Zinc Finger 108 189 - -
Cca11g01204 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 469 - -
Cca11g01204 470 Gene3D Classic Zinc Finger 33 104 - -
Cca11g01204 470 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 469 - -
Cca11g01204 470 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Cca11g01204 470 SUPERFAMILY beta-beta-alpha zinc fingers 53 150 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01204 Cca-Chr11 30337907 30341463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01204 1 470 IDZ Gene Family AT5G66730 59.806 3.60e-173 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g01204 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01204 K25869 - gmx:100783947 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01367 06 28532615 28537467 Cca11g01204 11 30337907 30341463 PCT