Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01198 ATGGTGTCGTCCCCTCATAGCTCTGCTCCTCATAATTCCACACCGGATAACGCCACACCCGATAACGCCACACCCGACAATTCCACACCCGATAACGCCACTCCCGATAATGCCACTCCCGATAATGCCACACCGGATAATTCCCACGCGTCGTCACACAAAAGTTCCACGTCGACGCCTTCTTCAGGGGGAGATAATACTGCGTCCAACGATTTTTCGTTACAATCGCTATCACATGACGGCTCCACATCCAACAAAGACAGTAGCGGGCGTAAAGCCGCACTCGGTGCTGGGCTCGGAGTAGGCTTCGTTATTCTCGTGATTGTCATCATAGCTATTATTTGGTGCTGCAGGAGGAAGAAACGCAAGCAAAAGTACTATTCTCAGGAAAAAGGGAATAACTTCCACAATAATGGGCAACAACAGGCTCTTCCTAATTGGCAACAAGGGGGTGACCATGTTGTGAGGGTACAACAAGGAggaatgggaatgggaatgggacaacaaggaggaatgggaatgggaatgggacagcaacaaggaatgggaatgggacagcaacaaggaatgggaatgggacagcaacaaggaatgggaatgggaCAACAACAAggaatgggaatgggaatgggtatgggaatgggaatgggaatgggaatgggaatgggTCCTCCTAGCCAAGGTTGGGGTGCATCAAATCCTCAAATGAATAGTGGTGATATGAGTTCCAATTACTCATTGGGAAGGCCTTCTTCCTCACCTGGACTTTCTCTCACACTCAAGGGTGGTACCTTCACCTATGAGGAATTAGCAGCTGCCACCCAAGGATTTGCTAATGAGAACATCATAGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAGTTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTCAAATCAGGTAGTGGGCAAGGAGAGCGCGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAGAGAATGTTGGTTTATGATTTTGTTCCCAATCAAACTTTGGAACATCACCTTCATGGAAAGGGCATGCCTACCATGGATTGGCCAACTAGAATGCGAATTGCACTTGGATCTGCCAAGGGGCTTGCCTACCTTCATGAAGATTGTAGTCCACGCATTATCCACCGTGATATTAAAGCTTCTAATGTCCTTATTGATTATAGCTTTGAAGCAAAGGTGGCTGATTTTGGATTGGCTAAGTTGACCACTGATAATAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACCTGGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCCTTTGGGGTCATGCTATTGGAACTCATAACTGGAAAGCGACCTTTGGATCACACAAATGCCATGGACGAAAGCTTAGTGGATTGGGCTAGACCACTCTTGAATAAAGGGCTAGAGGAGGATGGCAACTTTGGAGAGTTAGTGGATCCATTTTTGGAAGGCAAGTACAATACTCAGGAAATGACAAGAATGGCAGCATGCGCTGCTGCAAGCATTCGTCATGCTGCCAAAAAGCGTCCAAAAATGAGTCAGATTGTAAGAGCACTGGAAGGAGACGCCTCAATAGAAGACTTGAAAGATGGAATGAAGATTGGAGGGAATAGTAGTGCTTACACTTCATCTGGAAGCTCTGAATATGATACGATGCAATACAATGCTGATATGATGAAGTTCAGAAAGGCAATAATGGAAAGCCAAGAATTTGCCGACAGTGGTGAGCTTACCAGCAAGGAGATGGGTCGTCATTAG 1851 0.4138 MVSSPHSSAPHNSTPDNATPDNATPDNSTPDNATPDNATPDNATPDNSHASSHKSSTSTPSSGGDNTASNDFSLQSLSHDGSTSNKDSSGRKAALGAGLGVGFVILVIVIIAIIWCCRRKKRKQKYYSQEKGNNFHNNGQQQALPNWQQGGDHVVRVQQGGMGMGMGQQGGMGMGMGQQQGMGMGQQQGMGMGQQQGMGMGQQQGMGMGMGMGMGMGMGMGMGPPSQGWGASNPQMNSGDMSSNYSLGRPSSSPGLSLTLKGGTFTYEELAAATQGFANENIIGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGGQRMLVYDFVPNQTLEHHLHGKGMPTMDWPTRMRIALGSAKGLAYLHEDCSPRIIHRDIKASNVLIDYSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPLDHTNAMDESLVDWARPLLNKGLEEDGNFGELVDPFLEGKYNTQEMTRMAACAAASIRHAAKKRPKMSQIVRALEGDASIEDLKDGMKIGGNSSAYTSSGSSEYDTMQYNADMMKFRKAIMESQEFADSGELTSKEMGRH 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01198 616 MobiDBLite consensus disorder prediction 1 90 - -
Cca11g01198 616 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 198 615 - -
Cca11g01198 616 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 5 177 - -
Cca11g01198 616 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Cca11g01198 616 SMART serkin_6 277 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01198 616 ProSiteProfiles Protein kinase domain profile. 277 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01198 616 MobiDBLite consensus disorder prediction 228 250 - -
Cca11g01198 616 Gene3D Phosphorylase Kinase; domain 1 251 352 - -
Cca11g01198 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Cca11g01198 616 MobiDBLite consensus disorder prediction 180 202 - -
Cca11g01198 616 MobiDBLite consensus disorder prediction 1 91 - -
Cca11g01198 616 Pfam Protein tyrosine and serine/threonine kinase 280 483 IPR001245 GO:0004672|GO:0006468
Cca11g01198 616 Gene3D Transferase(Phosphotransferase) domain 1 353 565 - -
Cca11g01198 616 MobiDBLite consensus disorder prediction 222 250 - -
Cca11g01198 616 SUPERFAMILY Protein kinase-like (PK-like) 256 550 IPR011009 -
Cca11g01198 616 PANTHER RECEPTOR-LIKE KINASE 5 177 - -
Cca11g01198 616 PANTHER RECEPTOR-LIKE KINASE 198 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01198 Cca-Chr11 30186667 30191462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01198 249 606 Trihelix Transcription Factor Family AT1G70460 60.833 2.79e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca11g01198 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01198 - - gmx:100805872 673.315