Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01188 ATGCATCCTTGTTACTGCGGAGCCTCCCAGGGGCACGTGATAGGCACCTGCACCTGCACCATGCTCTATGACTATGACTATGCCCACGCCCCCTACGACGACTATTCCTCTTTCACGCCCTCTCCTTCTTCCGTCGACTGCACGCTCTCCCTTGGCACCCCCTCCACGCGTTTGACCCAAGAAGACCGTCGCTCTTCTGTCTCTAACTTTTGTTGGGACTTGCTCCAATCCAAACACACCTCGCACAACCCTTCCAAGTCTACCAGACCCTCCAATGCTTCCTCCCACAACGACCCTCTCCTCGCTCGTCGCTGCGCTAACTGTGACACCACTTCCACTCCTCTTTGGAGGAACGGTCCTCGTGGCCCTAAGTCGCTATGCAATGCTTGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCCGCCGCCGCCAGCGCCACGTCAGCGGCGGTTCCCGGCGGTGTAATGGAATCGGCGCACGCGTACGGGCAACACAGCAACACGTGGTACGCGCAGTCGCAGAGCCAGAAGATGGGGAACGAGTACCGCTTTATGGAGGATTCCGATAGAGAGTCGGAGAATGGCATTCCGTTTCTCTCTTGGAAGCTCAACGTGGCGGACCGAACTAGCCTCGTTCACGACTTCACCAGATGA 660 0.5742 MHPCYCGASQGHVIGTCTCTMLYDYDYAHAPYDDYSSFTPSPSSVDCTLSLGTPSTRLTQEDRRSSVSNFCWDLLQSKHTSHNPSKSTRPSNASSHNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAASATSAAVPGGVMESAHAYGQHSNTWYAQSQSQKMGNEYRFMEDSDRESENGIPFLSWKLNVADRTSLVHDFTR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01188 219 PANTHER GATA TRANSCRIPTION FACTOR 18 32 218 IPR044272 GO:0003700|GO:0009908
Cca11g01188 219 PANTHER GATA TRANSCRIPTION FACTOR 18 32 218 - -
Cca11g01188 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 141 - -
Cca11g01188 219 MobiDBLite consensus disorder prediction 79 98 - -
Cca11g01188 219 SMART GATA_3 99 151 IPR000679 GO:0006355|GO:0043565
Cca11g01188 219 CDD ZnF_GATA 104 136 IPR000679 GO:0006355|GO:0043565
Cca11g01188 219 Gene3D - 101 183 IPR013088 GO:0006355|GO:0008270
Cca11g01188 219 Pfam GATA zinc finger 105 139 IPR000679 GO:0006355|GO:0043565
Cca11g01188 219 ProSitePatterns GATA-type zinc finger domain. 105 130 IPR000679 GO:0006355|GO:0043565
Cca11g01188 219 ProSiteProfiles GATA-type zinc finger domain profile. 99 135 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01188 Cca-Chr11 29957559 29959037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01188 41 219 C2C2-Gata Transcription Factor Family AT3G50870 47.303 1.29e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca11g01188 GATA 5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01188 - - gsj:114390318 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01339 06 28250994 28252504 Cca11g01188 11 29957559 29959037 PCT
Cca11g01188 11 29957559 29959037 Cca06g01216 06 26566067 26577259 PCT