Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01183 ATGGATATGAGAGAGCAAGATAAGGAACTAGAGATGCCTAGTACATTAGGTTATAACCTCCCCAATAAAAATTCCTCTTCTTCCAAACTATCATCACCAATAGGGGAAAAAAGTGACCAACAACCTCCTCAATCTAACACATTAATTTTCAGTGATCCACCCCAAACTTCACATCTTCACCATAATCTCTATACCCCTTCTCTTCCACCAAACCCACTTCAACTTCCACAATCTCAGCGACCCAGAAGAGATCCAGATCCAAATCCTATTTCTCCCCCTATCATCATaaccactccaagaacatcactaccacaacctcacacaacaacaacagcaTTCAGATACCGAGAATGTCTGAAGAATCATGCAGCAAGCATGGGAGGCCACGTCACAGATGGGTGTGGAGAGTTCATGCCAAATGGAGAAGATGGCACCCCAGAATCTTTCAAGTGTGCAGCTTGTGATTGCCACCGCAATTTTCACAGAAAAGAAGCTGAAGGAGAGCCACAATATGTTCTCAACTACCACCACACTTACTCCTACAAAAACAATAGGAACATTATTCATTCTCCACAATCTCACCTTCAGTTTCCCATACCCCACCACCACCTTCATGGGGTGGTGGCTGCCACCCCTTCTAGTGGGCCGATCCAGCCCGTGATGTTGGGCTTAGGGGGAGGCCCAGCTGAGTCCTCCAGCGAAGATCTCAACATGTTTCAGACCAGTGATGGAGGGCAATTGTTATCGGTGCAGCCACCACTTTCATCTTCCAATAAGAAGAGGTTCAGGACCAAGTTCACACAGCAGCAAAAGGATAGAATGATCGAGTTTGCTGAGAAACTTGGGTGGAAGATCCAGAAACAAGATGAACAAGAGTTGCATCAATTTTGCTCTCAGGTTGGTGTAAAAAGACAGGCTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATTGAAGGTGGTGCTTTAGATGATTTTTGTGATGGCTTTTATGGTGGCAATCAAGAATTTTTGGGAGAATTCAATGGAGGTACTTGCAAAGATTTCGAAGATCCTCGTGATTTGGCAATATCGGGCTTAGGTCAAAATCATCAAAGCACAAAGGTTGTGCTTGTTTCTGTACCATTTTATTCTTTTCCTACGAAGAAGTCATCATAA 1173 0.4211 MDMREQDKELEMPSTLGYNLPNKNSSSSKLSSPIGEKSDQQPPQSNTLIFSDPPQTSHLHHNLYTPSLPPNPLQLPQSQRPRRDPDPNPISPPIIITTPRTSLPQPHTTTTAFRYRECLKNHAASMGGHVTDGCGEFMPNGEDGTPESFKCAACDCHRNFHRKEAEGEPQYVLNYHHTYSYKNNRNIIHSPQSHLQFPIPHHHLHGVVAATPSSGPIQPVMLGLGGGPAESSSEDLNMFQTSDGGQLLSVQPPLSSSNKKRFRTKFTQQQKDRMIEFAEKLGWKIQKQDEQELHQFCSQVGVKRQAFKVWMHNSKQAMKKKQIEGGALDDFCDGFYGGNQEFLGEFNGGTCKDFEDPRDLAISGLGQNHQSTKVVLVSVPFYSFPTKKSS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01183 390 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 321 - -
Cca11g01183 390 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 54 321 - -
Cca11g01183 390 MobiDBLite consensus disorder prediction 17 68 - -
Cca11g01183 390 SUPERFAMILY Homeodomain-like 253 320 IPR009057 -
Cca11g01183 390 MobiDBLite consensus disorder prediction 69 94 - -
Cca11g01183 390 MobiDBLite consensus disorder prediction 1 107 - -
Cca11g01183 390 Gene3D - 249 320 - -
Cca11g01183 390 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 164 IPR006456 -
Cca11g01183 390 Pfam ZF-HD protein dimerisation region 113 165 IPR006456 -
Cca11g01183 390 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 114 164 IPR006456 -
Cca11g01183 390 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 259 316 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01183 Cca-Chr11 29716208 29721338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01183 88 323 ZF-HD Transcription Factor Family AT2G18350 47.951 3.05e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca11g01183 ZF-HD_dimer 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01183 - - ccaj:109810490 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01336 06 28222832 28223446 Cca11g01183 11 29716208 29721338 PCT