Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01179 ATGGGAACTGATGGCAGTGAACTGGTAGACACAGTACCAAATCCTCGCTCCTTTAAGGTACATCATGCAATGTGCACAGATCTCAGGAAATTAGTTGATAGAACCTTGCGGATACTTCCACGTATAGAGGCAGTGCGCCCTCCATCCTCAGGAATAAAGGCTCTGTGTTCGCTAAGAAATGCAATTGATAAAGCCAAAGAACTCCTGCTACACTGCTCAGAATCTAGTAAACTCTACCTGGCAATAACAGGGGAGTCCATACTCTCAAAATGCCAGAAGGCAAGAAAATCATTAGTGAAAAGCTTACTCCAGATTCAGAATATGGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGACTAATTGATGATCTTGAGTGTGTGACATTTGTCCTGGACCCTGCTGTAGAAGAAGCTGGGAGGGTGTTGAGCCAATTGCTCCAGCCATCTTCTTCAACCTCAGATACAGATTCAATGGAAAATTTTGAAATAAAGTATTTTCAGTTTGTAGCAGCCAAACTTAGTATTACTTCCCCAGCTGCCATCATAACAGAGAAACGATCTATTGAGAAGTTGCTAAAAAAAGTCAAACCAAAAGAGCAGACAAAAGAGATTGTCTTGAAAAATCTTTTGTTTCTCCTGCTAAGCCACCGAAAATCAATCACGGGAAAACAAATGGAGGTCTATTCTCAAAGTGAAGGACCAATCACAACTGAGAACTCTGGTCATGAGTCTCAAAGAACACTTCATGTTGAGTCAGACCCATACTTGAACCATGGTCATTACAGAACTCCTGCCAGTGAGTTGGGTAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGAATCAGGAGAAACTTATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTCATACTATAAGCCCAAAAACTAAAAAGAAACTGGCTCATATGGCATTGACTCCAAACGTTACCTTAAAGGACTCAATATTGAAGTGGTGTAAAACTAATGGAATCTCCATTCCTGACCCGAGTAGGCATGCACAAGATTTACACTCATGGGAAGCTTCCTCCAATTCCGTTAGGAGTTTTGCAAGTTCTTTGTATGATTTGAACTTCCAAATGGATCTTAGTAACGTATCACTTGGATCATTAGATACCAGCTATAATTCAGATTCCTCCCATGCTAAGCCCAATCATGGCTTAAATTTGATGTTGAACAAGACAAGTGACAATTCTCGTGGGCATCAATCTCATGCACAGATACATGAAGCTGATATGCATTTGTCTAAACTCCATGAACTGCAATGGGAATCTCAATGCCAAGTCATTGAAGATACGCACATAGATTTCAAATGCAATTGCCAAGCTTTTTGCTCTGTGTCATCTGAGAATTTCATTGACCCACTCACAAGATTTCTGAGCACTGCATGTGAGAGACAAGATGTAAAAGCTCTGAGAGCAGGAACCATGTTGCTATTGGAATTTATGAACTGCTGCAGAAATGGTATGACCAATTTAAGTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGAAACAGAGGTGATTGGAGAAGCTCTTGCCATAATGGAAGAACTGTCAGGGAATTGGAATGAAAAAGCCAACACTGCAGCTTCCAGTGTGCTCACCTCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTTTCAACGAAAAGCTATTAAAATAATGTATAATTTTTCTTCCAATAGTGAAATTTGTTCCTACATGGTATCACTCGGATGTATCCCAAAGTTACTGCCATTTTTTGAAGACAGGACCCTTTTGAGAGACTGTATACTTATCTTGAAAAACCTTAGTGATACTAAAGAAGGTAGGGTAACTTTTGTTGAAACAAAAGGATGCATAGCTTCTGTTGTTGAAATACTTGACACTGGCAATGATGAGGAAAAAGAACCTGCACTAGCTATTATACTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAGATGGTTATGTATGAGGGGATTCTTCCTTCTCTTGTTAACATCTCTAATAAAGGAAGTGATATGGCGAAGGCTTATGCGGTGGAACTGCTCCGCCTCTTGAGGGATGATGACGAGTTAGAGAATGGAGATTGTTATGAGACAAACCCCAATGCCTCTCAAGATTCTAACAATCAGTATCAAGAAAAGAAATCATCAAAGAAGTCGACAATTTTGAAGAAACTGTCACGCTTCTCAAAATCCAGTTCAGTTGCATCAAAAAACAAGAGATGA 2283 0.399 MGTDGSELVDTVPNPRSFKVHHAMCTDLRKLVDRTLRILPRIEAVRPPSSGIKALCSLRNAIDKAKELLLHCSESSKLYLAITGESILSKCQKARKSLVKSLLQIQNMVPVMLAAEISRLIDDLECVTFVLDPAVEEAGRVLSQLLQPSSSTSDTDSMENFEIKYFQFVAAKLSITSPAAIITEKRSIEKLLKKVKPKEQTKEIVLKNLLFLLLSHRKSITGKQMEVYSQSEGPITTENSGHESQRTLHVESDPYLNHGHYRTPASELGRLTPPEEYTCPISLRLMYDPVVIESGETYERMWIQKWFDEGHTISPKTKKKLAHMALTPNVTLKDSILKWCKTNGISIPDPSRHAQDLHSWEASSNSVRSFASSLYDLNFQMDLSNVSLGSLDTSYNSDSSHAKPNHGLNLMLNKTSDNSRGHQSHAQIHEADMHLSKLHELQWESQCQVIEDTHIDFKCNCQAFCSVSSENFIDPLTRFLSTACERQDVKALRAGTMLLLEFMNCCRNGMTNLSEDTCIMLASLLETEVIGEALAIMEELSGNWNEKANTAASSVLTSVSKILDSGNKEFQRKAIKIMYNFSSNSEICSYMVSLGCIPKLLPFFEDRTLLRDCILILKNLSDTKEGRVTFVETKGCIASVVEILDTGNDEEKEPALAIILSLCSQRVEYCQMVMYEGILPSLVNISNKGSDMAKAYAVELLRLLRDDDELENGDCYETNPNASQDSNNQYQEKKSSKKSTILKKLSRFSKSSSVASKNKR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01179 760 CDD RING-Ubox_PUB 279 319 IPR045210 -
Cca11g01179 760 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Cca11g01179 760 MobiDBLite consensus disorder prediction 716 735 - -
Cca11g01179 760 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 752 - -
Cca11g01179 760 Gene3D - 456 606 IPR011989 -
Cca11g01179 760 PANTHER U BOX DOMAIN-CONTAINING 2 752 - -
Cca11g01179 760 SUPERFAMILY ARM repeat 522 709 IPR016024 -
Cca11g01179 760 SUPERFAMILY RING/U-box 263 350 - -
Cca11g01179 760 MobiDBLite consensus disorder prediction 713 739 - -
Cca11g01179 760 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Cca11g01179 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 347 IPR013083 -
Cca11g01179 760 Gene3D - 607 715 IPR011989 -
Cca11g01179 760 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Cca11g01179 760 SMART arm_5 666 706 IPR000225 GO:0005515
Cca11g01179 760 SMART arm_5 584 622 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01179 Cca-Chr11 29587294 29592837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01179 15 708 U-box Gene Family AT4G36550 37.960 1.59e-131 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01179 - - gmx:100798951 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01330 06 28164920 28170576 Cca11g01179 11 29587294 29592837 PCT