Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01177 ATGTCGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATTGGCAGCACATCAAAGCGGGGTGCAGAAAGCAAGCGTCGGCTCAGTAGGACAAAGTCCTATGTAGCTCCAGATGTTCTTGTAACACCATCTGAACTTATTCAACAGGGACAATGGGCAAATCTACCATCAGAATTACTTTTAGACATAATACGGAGGGTTGAAGAGAGTGAGACTTCTTGGCCTGCCCGTGCTGTTGTTGTCTTTTGTGCTTCGGTATGTAAATCATGGAGGTCTATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCATCAGAGAATGATAGTAATAAGTTGTTATTAGCTGCCAAGAGGATAAGAAGGGCAACAGGCACCGACTTTGTCATATCCTTGGCTGCAGATGATTTTTCTCGAGCCAGCAGCAAATATGTTGGTAAACTGAGGTCTAACTTTTTGGGTACCAAGTTCACCATACATGACAGTCAACCTCCACACGATGCTGCATTTCAACAAAATTGTCAATCTAGTAGGAGATTTCATTCTAAACAGGTGTCACCAAGAGTTCCAGCTTGTAGCTATATTGTTAGCACTGTTTCCTATGAGCTGAACGTCCTCTGCACTAGAGGGCCAAGAAAAATGCAATGTGTCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCAATGCCCCAACTCCAACATCTTTCCCTCAACTTTTTGATGAACCTTTCTTTCCATCACCAGCTATCAAAAAGAAAGTTCCAATTACAGATTTAAGCTCTGCAAGCTATTCAGAGCAACCAGTATTGAATCAAGGCTCAATTGAGCCGTTAGCACTAAAAAACAAGGCTCCCAGGTGGCATGAACAGCTACAGTGCTGGTGCCTAAACTTCAAAGGTCGTGTTTCAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATATTTCTGCTGAGGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACTGTTATCCACTATCTACCTTCCAAGCATTTGCCATTTGCTTGAGCAGCTTTGACACTAAACCAGCCTGTGAATGA 1245 0.4257 MSLRSIVRELKEMRDGIGSTSKRGAESKRRLSRTKSYVAPDVLVTPSELIQQGQWANLPSELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKETSTYLLYFGLVPSENDSNKLLLAAKRIRRATGTDFVISLAADDFSRASSKYVGKLRSNFLGTKFTIHDSQPPHDAAFQQNCQSSRRFHSKQVSPRVPACSYIVSTVSYELNVLCTRGPRKMQCVMNSIPVSAIQEGGNAPTPTSFPQLFDEPFFPSPAIKKKVPITDLSSASYSEQPVLNQGSIEPLALKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQERVILQFGKIGKDIFTMDYCYPLSTFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01177 414 SUPERFAMILY F-box domain 48 99 IPR036047 GO:0005515
Cca11g01177 414 Pfam Tub family 116 409 IPR000007 -
Cca11g01177 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Cca11g01177 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cca11g01177 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cca11g01177 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cca11g01177 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Cca11g01177 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cca11g01177 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Cca11g01177 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Cca11g01177 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Cca11g01177 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Cca11g01177 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Cca11g01177 414 PANTHER TUBBY-RELATED 1 414 - -
Cca11g01177 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Cca11g01177 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Cca11g01177 414 Gene3D - 49 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01177 Cca-Chr11 29573948 29577823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01177 1 414 TUB Transcription Factor Family AT2G18280 62.319 2.49e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca11g01177 Tub 5.4e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01177 K19600 - gmx:100805380 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01329 06 28159760 28161574 Cca11g01177 11 29573948 29577823 PCT