Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01152 ATGGATTTTGCCAGTTTTCATCTTCAGCATCAGCTCCAAGAAGAATCTGCTCAGTGTTTAATAACTTCATCAACCCCACCACATGATTCTAAACCTTCCACTGATATCACTAGTCAATCATGGATCCCAAGCAACATGTTCAATGGTTGTAACAGTGGATTTCCAACCGAAAACTTTACAAATTCAAGAGAGCTACAACACAAGCACGCCACAACTGATTCATCACTAAGAATTTCAACAAGGCAAGCCTTTAGTTTTCACCATGGAAAAAGCCTCACTCAACAGCCAGATAGTGATCTCGTTCCAGCAAGAATCAAAGGTGAAATGATCAACACTATGGAGGAATCATCACTAGTCCCTATTCATGAACCACGATATTCTCCTAGTTTCTTATCTAGTCTTCGTGTAACCGGTGAAGAGTTTTTTCTTGCGGAGAATAATGCATATCATGATGACAAGCCTATAGATGGAGGGACCCTAAGCAAGAGATACAATAACTTTGGCGATGTTTCCTTGAATTGGAATTTACCAACCCTAGATATGACCTCTTCCTTAGTTTCATGTTCTTTGGGATTAAATCCTAAAATGTTAGATCTGCATACAAGTAATCATGCTCTTCAACCTTGCTATAATACTTTTGGTCTTAACGAGAGCATGTCTTTGAGCTATGGTGACATGCATGGCCGCGAAAATAGTTCATCAAACAGCTCAAATAAAATTTCATCATTTACAAGAGAAGTTGCAATGACGAAAAGGCCCGGCAATTGTTCTCTACCAAAAGAATCTGAAGCAAAAGCTAAGAAGTCAAGGCCATCTTGTCCGCCCCTAAAGGTCAGAAAGGAAAAATTGGGGGATAGAATTCAAACTCTCCAGAGATTGGTGGCACCTTTCGGGAAGACCAGCACAGCCTCTGTCTTGAGTGAAGCCATTGGTTACATCCACTTCCTTCATCAACAAGTCCAGACTTTGAGCATTCCTTACATGAAATCCGTGCAAACCAAGCCCTCTAGAATGGTGCAGCTGGATTCAAATAGCAGAGAATTAAAGCCAGACCTTAGAAGCAGAGGCTTGTGTCTTGTTCCCCTTTCTTACGCATCATTTGTTCATCGCTGTGTTTAG 1119 0.4102 MDFASFHLQHQLQEESAQCLITSSTPPHDSKPSTDITSQSWIPSNMFNGCNSGFPTENFTNSRELQHKHATTDSSLRISTRQAFSFHHGKSLTQQPDSDLVPARIKGEMINTMEESSLVPIHEPRYSPSFLSSLRVTGEEFFLAENNAYHDDKPIDGGTLSKRYNNFGDVSLNWNLPTLDMTSSLVSCSLGLNPKMLDLHTSNHALQPCYNTFGLNESMSLSYGDMHGRENSSSNSSNKISSFTREVAMTKRPGNCSLPKESEAKAKKSRPSCPPLKVRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQVQTLSIPYMKSVQTKPSRMVQLDSNSRELKPDLRSRGLCLVPLSYASFVHRCV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01152 372 MobiDBLite consensus disorder prediction 261 277 - -
Cca11g01152 372 MobiDBLite consensus disorder prediction 251 277 - -
Cca11g01152 372 CDD bHLH_AtbHLH_like 277 324 IPR045239 -
Cca11g01152 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 368 - -
Cca11g01152 372 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 368 - -
Cca11g01152 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 327 IPR036638 GO:0046983
Cca11g01152 372 Gene3D - 277 341 IPR036638 GO:0046983
Cca11g01152 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01152 Cca-Chr11 28707924 28712528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01152 233 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 51.724 1.08e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01152 - - gmx:100785177 533.872