Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01143 ATGGCGGGGTTGTTCCCATTAGGCGGAGGACGAGGTAGCAGCAACCAACAATACAACAACCAAGGCAGTGAGATTCCACACGCGGAGACGTGGTACAGCAAAAACGACGACGCATCGTCCTACCGAGGGCTTGAGCTATGGAACcagcaccagcagcagcagcatcattatcaccatcaccatcaCGTGATGCATCCGCATGCGCGTCCCCTCCTGCAGCGAGATCTTTACTCGTCGGGGGTGGGGCCCAGCAGGGGCGTCTCCGATGACCAGTCGTCGTCGCGGTCGGCGCTGGCGGCGATGCGCGCGGCGGAGGGAGGGATAAGCTGCCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGGTACGAGTGCCAAACGCACGTGAAAAGCACGTGGGTTCCGGCTTCAAagcggcgcgagcggcagcagcagctcgcggcgcttcaggagcagcagcagAGAGACATTTCGAAACGGCCGAGGGACCCAACGGCTTGCACTGCTCGTTTGCCCTCGTCAGGGTTAGAAGAAGGGCATTTTCCTGCTGTGGTGAGTTCTCCCGCGGAGTTCAGGTGCGTGAAGGTTAGCTGTTTGGAAGAAGCTGATGACAGGTACGCGTACCAAACGGCGGTGAAAATAGGAGGACATATGTTCAAGGGAATCCTCTATGACTATGGTCCTGAAaatagcaataataatagtggtaataataatTACATGACTGGGGAAACCTCTGCTGGTGTTGGTGGAAGTCAGCCCTTGAACTTTTCTGTTTCTGGGGCTGTTGCGTCTTCTTCTGCTGCACTTGTTGATCCTTCTTCCTTATATCAAGCTCCACATAACACCTTCATGTCTGCTAGTGGTACGCAATTCTTCCCTCACACGAGATCTTGA 933 0.4866 MAGLFPLGGGRGSSNQQYNNQGSEIPHAETWYSKNDDASSYRGLELWNQHQQQQHHYHHHHHVMHPHARPLLQRDLYSSGVGPSRGVSDDQSSSRSALAAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQQRDISKRPRDPTACTARLPSSGLEEGHFPAVVSSPAEFRCVKVSCLEEADDRYAYQTAVKIGGHMFKGILYDYGPENSNNNSGNNNYMTGETSAGVGGSQPLNFSVSGAVASSSAALVDPSSLYQAPHNTFMSASGTQFFPHTRS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01143 310 MobiDBLite consensus disorder prediction 10 31 - -
Cca11g01143 310 MobiDBLite consensus disorder prediction 1 31 - -
Cca11g01143 310 MobiDBLite consensus disorder prediction 77 96 - -
Cca11g01143 310 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 109 151 IPR006510 -
Cca11g01143 310 MobiDBLite consensus disorder prediction 148 184 - -
Cca11g01143 310 Pfam Domain of unknown function (DUF702) 107 241 - -
Cca11g01143 310 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 310 IPR007818 GO:0003700|GO:0006355
Cca11g01143 310 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 192 240 IPR006511 -
Cca11g01143 310 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01143 Cca-Chr11 28315920 28318842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01143 44 310 C2H2 Transcription Factor Family AT3G51060 46.474 1.15e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca11g01143 DUF702 3.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01143 - - gmx:100789129 411.764