Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01133 ATGCTTTACCAAACTCAACATCTTCCTCTCTTTCAATTTCATCCCTTCACTTCTTCCACCACCCCTCAACTTTCCACACCACCATCATCCCTAACTCCTCTTCTCCTCTCTCAGGAAACGGAAACGGAAATGGAGTGTTTGGAAGGAGCGTTGAAGAGCAGTTTGAGGAAAGACACGGCGTTGAAAGTGAGTCCCCAAACGCTCCTAGAGGAGTTGGCGGCGCCAAACGTGCAAAACGTCGTCGCTTCTTGCGACGACTTCTTCGTTGACGACCTCCTCGACTTTTCGCTCCTCGAAAAAGAAGAACCCGACAACCACACCCACGACTCTACCTCGGTTTCCCCGAAGAGGcacaaccacgaaattcacaataacaatcacaatcacaatcCCTCCTTCAACGACCATTTCAACAGCGAACTCACTGTTCCGGCCGAGGACGTCGCCGACTTGGAATGGTTGTCTCATTTCGTTGAAGATTCTTTCGCGGAGTACTCCGTTTCCTTCCCCACGGTAACCGTAACGGAAAGCCTCTCGGAGAGGGCACCGGAACCGGGGAATACCGGTTTCGCTTTTAAAACCCCGGTTCCGGCCAAGGCCAGGAGCAAGCGAACACGAACCGGGGTTCGCGTTTGGCCGCTCAAGTCACCTTCTTTCACCGACACGTCATCGACTTTAAcctcttcctcttcttcctcctcctcttcctcgccctccagcccctcGCGAATTTGCGAGGAGAAGAGAGCCAAGAAAAGggccgccgcggacggcggcgcggctcaggcggcgcggcggtgcagccactgcggcgTCCAGAAAACCCCCCAGTGGCGAACCGGACCGCTCGGAGCGAAGACTCTCTGCAACGCGTGTGGGGTTCGCTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCGTGTAGCCCTACTTTCTCTAGTGAGTTGCACTCGAACCACCACCGTAAGGTGCTGGAGATGCGGCGGAAGAAGGAGGTTGTGGTTGAACCGGACACCGGTTCAGGTTCCGGTTCGGCAACTTTGGTTCCCGGTTTTTGA 1062 0.467 MLYQTQHLPLFQFHPFTSSTTPQLSTPPSSLTPLLLSQETETEMECLEGALKSSLRKDTALKVSPQTLLEELAAPNVQNVVASCDDFFVDDLLDFSLLEKEEPDNHTHDSTSVSPKRHNHEIHNNNHNHNPSFNDHFNSELTVPAEDVADLEWLSHFVEDSFAEYSVSFPTVTVTESLSERAPEPGNTGFAFKTPVPAKARSKRTRTGVRVWPLKSPSFTDTSSTLTSSSSSSSSSSPSSPSRICEEKRAKKRAAADGGAAQAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVVEPDTGSGSGSATLVPGF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01133 353 ProSiteProfiles GATA-type zinc finger domain profile. 261 297 IPR000679 GO:0006355|GO:0043565
Cca11g01133 353 ProSitePatterns GATA-type zinc finger domain. 267 292 IPR000679 GO:0006355|GO:0043565
Cca11g01133 353 PANTHER GATA TRANSCRIPTION FACTOR 44 334 - -
Cca11g01133 353 SMART GATA_3 261 315 IPR000679 GO:0006355|GO:0043565
Cca11g01133 353 Pfam GATA zinc finger 267 301 IPR000679 GO:0006355|GO:0043565
Cca11g01133 353 Gene3D - 258 334 IPR013088 GO:0006355|GO:0008270
Cca11g01133 353 MobiDBLite consensus disorder prediction 216 243 - -
Cca11g01133 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 263 323 - -
Cca11g01133 353 MobiDBLite consensus disorder prediction 178 265 - -
Cca11g01133 353 CDD ZnF_GATA 266 314 IPR000679 GO:0006355|GO:0043565
Cca11g01133 353 PANTHER GATA TRANSCRIPTION FACTOR 44 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01133 Cca-Chr11 27851848 27853956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01133 48 341 C2C2-Gata Transcription Factor Family AT5G66320 51.235 5.20e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca11g01133 GATA 5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01133 - - pvu:PHAVU_003G258900g 377.867