Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01116 ATGCGTACCCTTCTCATCCTCGTGCTACTGTGCGCACACTTCTTATCCTGCGCCCGGTGCGGCTCCGTCACGGAGATCCAAGCCTTAACGTCGTTCAAGCTCAACCTCCACGACCCTCTCGGCGCGCTTAGCGCCTGGGACCCGTCAACGCCGTTAGCACCGTGCGACTGGCGCGGCGTTTCGTGCAAAAACGACCGAGTTACTGAGTTACGCTTGCCTCGTCTCCAACTCAGTGGCCAACTCGGTGACCGCATTTCAGACCTACGCATGCTTCGAAGGCTAAGCCTTCGTTCCAACTCCTTCAACGGCACTATCCCCCACGCGCTCTCGAAATGCACGCTCCTACGCGCTTTGTTCCTAGAATACAACTCTTTCTCCGGGGAACTCCCGCCGGAGATCGGAAACCTCGCCGGACTGCAGATTCTTAACGTCGCCGGGAACAACCTCTCCGGCGAAATCCCCAGCGAACTACCTCTCCGTTTGAAGTACATCGACCTCTCCGCGAACGCCTTCTCCGGCGAGATTCCGAGCTCCGTCGCGGGAATCTCCGAGCTTCAGCTTATCAACCTGTCGTACAACAAATTCTCCGGCCTGATTCCGGCGCGAATCGGAGAGCTTCAGAATCTGCAATACCTCTGGCTCGATTATAACCTTCTCGGAGGAACGTTACCTTCCTCGCTCGCGAATTGTTCCTCGCTCGTGCATTTGAGCGTCGAAGGGAACGCGCTCGCCGGCGTATTGCCGGCGACGATTTCGGCTCTGCCGAATCTTCAGGTGCTGTCCCTCGCGCAGAACGATTTCACCGGCGCCGTCCCGGCTTCCGTTTTCTGCAACGTTTCGCTCGCAGCGCCGTCGCTTCGCATCGTTCAGTTAGGTTTTAACGGTTTCACGGACTTCGCGTGGTCTCAGGAAGCCACGTGTTTCAGCGCGCTTGAGATTTTGAATATTCAGAGCAATCGCGTGCGCGGCAAGTTTCCGCTGTGGTTAACCAGCGTGAAAACGTTGTCGGTTCTCGATGTCTCCGGCAACGCGCTTTCCGGCGAGATTCCGCCGGAAATTGGAAGACACGAGAAATTGGAAGAGTTAAGGATGGCCAACAATTCTTTCTCCGGTAAGATTCCGCCGGAAATTGTGAAATGTAGGTCCCTGCGTGTTGTTGATTTTGAAGGTAACCGGTTTTCCGGCGAGGTTCCTTCGTTTTTTGGTAATCTGACAGGGTTGGAGGTTTTATCTCTCGGCGGGAACCACTTCACTGGTTCTGTTCCGGTGAGTTTTGGTGAGCTTGCGTCTCTTGAAACCTTGAGTTTGAGGGGTAATAGATTGAATGGTACAATGCCAGAGGAGGTGATGGGGTTGAATAATTTGACAATACTAGACCTTAGTGGAAACAAATTTTCAGGTCATGTTTCTGGGAGAATTGGGAATCTGAGTAAGCTAATGGTTCTGAATCTTAGTGGCAATGGTTTCTATGGAGAAATTCCTACTAGTTTGGGGAATCTTTTCAGGCTAACTACGCTTGACTTGAGCAAACAGAATCTCTCTGGTGAATTGCCATTTGAGATTTCGGGGCTTCCAAGTTTGCAGATTATTGCTCTTCAAGAGAACAAGTTGTCTGGGGTGATCCCTGAAGGTTTTAGCAGCTTGACCAGTTTGAAATATGTGAACCTAAGCTCTAACGAGTTTTCAGGGCATGTCCCTAAGAACTATGGCTTTATTCGATCATTGGTTGTTCTTTCACTGTCTGATAACCGCATCACAGGAATGATTCCCCCGGAAATTGGAAACTGCTCTGACATTGAAACTCTCGAGCTTGGATCAAACAATTTGGGGGGTCCCATTCCCTCGGATCTCTCTGGCCTTGCCCATTTGAAAGTGCTCGACTTGAGTAGTAACAATTTAACTGGGGCTTTTCCTGAGGATATCTTCAAATGCAGACGGTTAACTGTTTTGTTAGCAGATCACAACCAACTTTCTGGTGCTATACGAGGGTCATTGGCAGAGCTATCATATCTAACAATGCTGGATCTCTCTGCCAACAAATTGAGCGGAGAAATCCCAAGTAATCTAAACACGATCCCTGGTTTGGTGTACTTCAATGTCTCGGGCAATAACCTGGAAGGTGAGATTCCACCAATGCTGGGTTCTAAATTCAACGACCCTTCTGCATTTTCAAACAACCAGAACTTGTGTGGGAAGCCATTGGACAGAAAGTGCGAAGAGACAGACAGTGGGGAGAGAAATAGGTTAATAGTGTTGATCATTATCATCGCAGTTGGAGCTTGCTTATTGGCACTGTGTTGCTGCTTCTACATCTTCACGCTTCTCCGATGGCGCAGAAGGATCAAAGCAGCAGTGTCCGGGGAGAAAAAAAAGAGCCCTAGAACGAGTTCGGGAACGAGCCAAGGTCGCAGTAGCACCGACACCAACGGGCCAAAACTCGTCATGTTCAACACCAAAATCACACTCGCCGAAACCATCGAAGCCACGAGGCAATTCGACGAAGAGAACGTGTTAAGCAGAACAAGACACGGCCTAGTATTCAAAGCCTGCTACAACGACGGAATGGTCCTCTCCATCCGCAAGCTCCATGATGGTTCATTAGACGAAAACATGTTCAGAAAAGAAGCTGAATCGCTGGGGAAAATCAGGCACCGAAACCTAACCGTTCTCAGAGGCTACTACGCTGGCCCACCAGATACAAGACTCTTGGTCTACGACTACATGCCAAATGGAAACCTCGCAACGTTGCTCCAAGAAGCTTCTCACCTTGATGGCCATGTTCTGAATTGGCCAATGCGACACCTCATTGCACTAGGAATCGCACGCGGGGTAGCGTTTCTGCACCAATCATCACTTATCCATGGTGACATCAAGCCCCAAAATGTTCTCTTTGATGCGGATTTCGAAGCCCATTTATCAGATTTCGGGCTAGAAAAATTAACCTTGTCGAACCCAGTTGAAGCGTCGAGTTCAAGTGCTTCAGTTGGGACACTGGGTTATGTGTCCCCAGAGGTGGTGTTAACAGGGGAAGCCACGAAGGAGTGTGACGTGTACAGCTTCGGCATCGTGTTGCTGGAGCTTCTGACTGGGAAGAGGCCAGTGATGTTCTCGCAGGAGGAGGATATAGTGAAGTGGGTGAAGAAACAGTTGCAGAAGGGGCAAATCACGGAGCTGCTAGAGCCTGGTTTGTTTGAACTGGACCCCGAATCTTCGGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTGGGTTTGCTTTGCACTGCGCCAGATCCTCTTGATCGACCAACAATGTCTGACATTGTGTTCATGCTCGAAGGGTGTCGTGTTGGACCAGATATTGCGTCCTCTGCTGCACCCACCACGCAACCTTCTCCGGTGTGA 3381 0.5031 MRTLLILVLLCAHFLSCARCGSVTEIQALTSFKLNLHDPLGALSAWDPSTPLAPCDWRGVSCKNDRVTELRLPRLQLSGQLGDRISDLRMLRRLSLRSNSFNGTIPHALSKCTLLRALFLEYNSFSGELPPEIGNLAGLQILNVAGNNLSGEIPSELPLRLKYIDLSANAFSGEIPSSVAGISELQLINLSYNKFSGLIPARIGELQNLQYLWLDYNLLGGTLPSSLANCSSLVHLSVEGNALAGVLPATISALPNLQVLSLAQNDFTGAVPASVFCNVSLAAPSLRIVQLGFNGFTDFAWSQEATCFSALEILNIQSNRVRGKFPLWLTSVKTLSVLDVSGNALSGEIPPEIGRHEKLEELRMANNSFSGKIPPEIVKCRSLRVVDFEGNRFSGEVPSFFGNLTGLEVLSLGGNHFTGSVPVSFGELASLETLSLRGNRLNGTMPEEVMGLNNLTILDLSGNKFSGHVSGRIGNLSKLMVLNLSGNGFYGEIPTSLGNLFRLTTLDLSKQNLSGELPFEISGLPSLQIIALQENKLSGVIPEGFSSLTSLKYVNLSSNEFSGHVPKNYGFIRSLVVLSLSDNRITGMIPPEIGNCSDIETLELGSNNLGGPIPSDLSGLAHLKVLDLSSNNLTGAFPEDIFKCRRLTVLLADHNQLSGAIRGSLAELSYLTMLDLSANKLSGEIPSNLNTIPGLVYFNVSGNNLEGEIPPMLGSKFNDPSAFSNNQNLCGKPLDRKCEETDSGERNRLIVLIIIIAVGACLLALCCCFYIFTLLRWRRRIKAAVSGEKKKSPRTSSGTSQGRSSTDTNGPKLVMFNTKITLAETIEATRQFDEENVLSRTRHGLVFKACYNDGMVLSIRKLHDGSLDENMFRKEAESLGKIRHRNLTVLRGYYAGPPDTRLLVYDYMPNGNLATLLQEASHLDGHVLNWPMRHLIALGIARGVAFLHQSSLIHGDIKPQNVLFDADFEAHLSDFGLEKLTLSNPVEASSSSASVGTLGYVSPEVVLTGEATKECDVYSFGIVLLELLTGKRPVMFSQEEDIVKWVKKQLQKGQITELLEPGLFELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIASSAAPTTQPSPV 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01116 1126 Gene3D Ribonuclease Inhibitor 471 746 IPR032675 -
Cca11g01116 1126 Gene3D Ribonuclease Inhibitor 280 470 IPR032675 -
Cca11g01116 1126 MobiDBLite consensus disorder prediction 786 812 - -
Cca11g01116 1126 ProSiteProfiles Protein kinase domain profile. 832 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01116 1126 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Cca11g01116 1126 Pfam Protein kinase domain 844 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01116 1126 SMART LRR_sd22_2 206 229 - -
Cca11g01116 1126 SMART LRR_sd22_2 428 451 - -
Cca11g01116 1126 SMART LRR_sd22_2 254 281 - -
Cca11g01116 1126 SMART LRR_sd22_2 158 184 - -
Cca11g01116 1126 SMART LRR_sd22_2 404 425 - -
Cca11g01116 1126 SMART LRR_sd22_2 668 691 - -
Cca11g01116 1126 SMART LRR_sd22_2 452 478 - -
Cca11g01116 1126 SMART LRR_sd22_2 596 622 - -
Cca11g01116 1126 Gene3D Phosphorylase Kinase; domain 1 795 907 - -
Cca11g01116 1126 SUPERFAMILY RNI-like 68 394 - -
Cca11g01116 1126 MobiDBLite consensus disorder prediction 790 812 - -
Cca11g01116 1126 SMART LRR_typ_2 668 692 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 254 278 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 332 356 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 572 596 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 88 112 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 620 644 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 206 230 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 404 427 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 476 500 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 524 547 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 136 160 IPR003591 -
Cca11g01116 1126 SMART LRR_typ_2 428 452 IPR003591 -
Cca11g01116 1126 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1122 - -
Cca11g01116 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 952 964 IPR008271 GO:0004672|GO:0006468
Cca11g01116 1126 SMART serkin_6 832 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01116 1126 SUPERFAMILY Protein kinase-like (PK-like) 813 1111 IPR011009 -
Cca11g01116 1126 Gene3D Ribonuclease Inhibitor 161 279 IPR032675 -
Cca11g01116 1126 SUPERFAMILY RNI-like 397 712 - -
Cca11g01116 1126 Gene3D Transferase(Phosphotransferase) domain 1 908 1114 - -
Cca11g01116 1126 PRINTS Leucine-rich repeat signature 623 636 - -
Cca11g01116 1126 PRINTS Leucine-rich repeat signature 668 681 - -
Cca11g01116 1126 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1122 - -
Cca11g01116 1126 Gene3D Ribonuclease Inhibitor 22 160 IPR032675 -
Cca11g01116 1126 Pfam Leucine rich repeat 573 633 IPR001611 GO:0005515
Cca11g01116 1126 Pfam Leucine rich repeat 502 560 IPR001611 GO:0005515
Cca11g01116 1126 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Cca11g01116 1126 Pfam Leucine rich repeat 381 441 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01116 Cca-Chr11 27299516 27303947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01116 4 1126 Receptor kinase-like Gene Family AT4G36180 65.110 0.0 1437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Cca11g01116 Pkinase 9.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01116 - - gmx:100804785 1963.73