Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01114 ATGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTGGTTGGTTATTATCTCAGGAAGAAAGTTGCTTCGCAGAAGATTGATCTTGACGTTATCAAAGAGATCGACCTTTATCGCATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAGTATCCAACCGGAACAAGAACCAACAGAGCCACCATGGCAGGGTTTTGGAAGGCCACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTCATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAATATAGGCTTGAAACTGTCGAGAATGGACCTCCACAGGAGGAAGGATGGGTGGTGTGCAGAGCCTTCAGGAAAAGAACCAACGGCCAAACAAAGACTATTGAAGGATGGGATCGAAGCTACTTATACGATGAACAAGCAAGTGGTGTCAACTCTGGGGTGGACCCTATTGACCTTATCATAAGGCAACAACCTCAGAGTTTTTCAGCTCAAAGTTTCCTTTACAAGCAAGAGATGATAGAAGCAGAAAGTTTGAGCTTCATGCATGCAGATCAATTGGTGCAACTTCCTCAGCTAGAAAGCCCTTCTTTGCCATTATTAAAGAAGCAAACCTCAGTGTCGACCCTTATATCTAACCAAGATGATTATCAAAAGGGTTTATCATCCAACACAAAGAAAGTGACTGATTGGAGAGATCTTGACAAGTTCGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCACGAGATAGAAGGGGTGTCAAGCTTTGCTACTCATACTAGCTCAGACATGCCATTGCTGCTATTGCAGAATAGTAGGGATAATGAAGGGAACAAGTTAAACCCGTTTTTAAATACAAGTTCATCAGACTGTGACATTGGAATATGCGTATTTGAAAAATGA 1011 0.4332 MMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFRKRTNGQTKTIEGWDRSYLYDEQASGVNSGVDPIDLIIRQQPQSFSAQSFLYKQEMIEAESLSFMHADQLVQLPQLESPSLPLLKKQTSVSTLISNQDDYQKGLSSNTKKVTDWRDLDKFVASQLSQEERHEIEGVSSFATHTSSDMPLLLLQNSRDNEGNKLNPFLNTSSSDCDIGICVFEK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01114 336 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 314 - -
Cca11g01114 336 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Cca11g01114 336 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Cca11g01114 336 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Cca11g01114 336 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 314 - -
Cca11g01114 336 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01114 Cca-Chr11 27184203 27187060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01114 2 335 NAC Transcription Factor Family AT2G18060 60.109 9.66e-152 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca11g01114 NAM 4.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01114 - - gmx:100803726 532.332