Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01112 ATGAGAACTCGGAACGCCGATTCCGCTTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGCCGAGGAAATCCCCTGCGGCGAAGCGCACCGCCGCCACCAAAGCCAGGAGCACCAAGAAGAAGGAGGTCTCGCCCGCACCTGATTCCAACCCCGATCAATCTCCACTGGAGCAAAAATCGTTAGGCAGTGGTAGCAGTACAAAATCTGCCAAAAGGAAGGCTCCAGGGAGGCCGAGAACTAAAGTAATTGAGACTCCGAATTTGGAAGAACAGTGTGAGGCAGTAGCTGATGAAACTCCGGTTGAAGGTAATGGTGGAGCAGCAGAGAGAGTGGAAGATGTTGAAGTAGTTGATGCCGGTAATGTTGAGGGTGAGAAAGAGGGAGAACAAGGTGTTGGGTCTGTTGAATTATCTGATGAGACCGAACAGAAGTCGATGGAAGTGGATGAACCTGTTGATGAAAAGGTTTGTGAATTGGTGAAGGGAAATGCCATGGTGGAAGTTGAGGTAACTGCTTCTCAGGATGCTTCTGCTTCTTTTAAGCAACCGGGACGGCCCATTATGGACCTCAATATATCTGCGGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAAGGAAAGGAAGAGGTGAAAGAGCAGGAAGGCGACAGAGGGAAGGAAGAGTTGAAAGAACCAGAAGGAGACAAAGGGAAGGAAGAGTTGAAAGAACCGGAAGGAGACAAAGGAAAGGAGGAGTTAAAAGAACCGGAGGGAGAGAAAGGTAAGGAAGAGTTGAAAGAACAGGAAGGATTGAAATGTAAAGAAGAGTCCAAAGAACAGGAAGGAGAGAAAGGTAAGGTAGAGTTGATAGAACAGGAAGGACAGAAAGGAAAGGTTGAGTTGAAAGAACAGGAGGGAGACAAAGGCAAGGGAAAGTTGAAAGAGCAGGACCAAGAGAAAGCAAAGGGAGAGGAAACAAACTTTTCTGGACCGAAAGATAACACCGAGTCTTTTGGTGTAGAAGTGAAAGCCCAGATGCAAAATGAAGATGCTAATCCCAGTAAAGATGGTGGTGAAGGACCACAGAGTGGTGAAAAGTTAGATCTTGGAGAACAAGGGAGGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAAGATCCGGAGGAAGATCCAGAGGAACCTCCAGAAGAAACTGAGGCATTGGAGGAGGAGCATAGACAATTGGAGGCCATTGCAAATCAGCGGAAGATTAAAAAAGAACATGAGATTTTTGTTGGTGGGTTGGATCGAGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTTAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTGATACATGGTAAACGGTGTGGCACTGCACCTAGCGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCGATTAAGCAGAAGCTGAAGGATTATGGTATTGAAGCGGTTGAAGGCATTACACTTGTCCCAGATGTTCAACAAGAGGGCTTGAGTCGGGGATTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCAGACGTAATCTTTGGCCATACTGAGCGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAATCTGTGTTTATTAACGGTCTCCCTCCACATTGGGATGAAGACATTGTGAGGGAGCTGTTTAAAGCTTACGGTGAAATTGTAAGAATTGTGCTAGCACGAAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGATGGAGCATCGAAGATAAAAGTGAGGGCGAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGTTTCCGAATAGGTCATGCTAGGAGTGGAGCCTTTTCAAGATCAGGATCAGGAAGGGGGTTTGGACGGGGAAGACATCCCTTCAACAACAGGGGAAATTTCAACAGGGGCAGGAGTTTCTATCATGGTGGACACAGCCAAATTGGAAGAGTGGGTTTTCGGGATGACCGTGATTTTAATATGTATCCAGATTTCCATCAGAGGCAATTTGGTCCACAAGGAGCTGTGAGAGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGTCCATCTAGACCTTATCATGATAGAGCATGGGGTGGTATCCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATTTTGATGATCCATATCTATATGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCGCCTATATTTCATGGAACTCGTCAACATGATTCTTTTGGGCCTGGCAGCAGACAGTACCCGCCTGACTATTATGGTTCTGATTATGGTAGAGGTTCCTATTCATCTTATTATGGGGGTGAAGGCTATCAAGGCTCACATGGGCGTGGATACTATTATTAG 2760 0.4572 MRTRNADSASKSATPKKTPPPRKSPAAKRTAATKARSTKKKEVSPAPDSNPDQSPLEQKSLGSGSSTKSAKRKAPGRPRTKVIETPNLEEQCEAVADETPVEGNGGAAERVEDVEVVDAGNVEGEKEGEQGVGSVELSDETEQKSMEVDEPVDEKVCELVKGNAMVEVEVTASQDASASFKQPGRPIMDLNISADNEDCTGEKEGEKGKEEVKEQEGDRGKEELKEPEGDKGKEELKEPEGDKGKEELKEPEGEKGKEELKEQEGLKCKEESKEQEGEKGKVELIEQEGQKGKVELKEQEGDKGKGKLKEQDQEKAKGEETNFSGPKDNTESFGVEVKAQMQNEDANPSKDGGEGPQSGEKLDLGEQGRVELAEEDPEEDPEEDPEEDPEEPPEETEALEEEHRQLEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEAVEGITLVPDVQQEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHTERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDIVRELFKAYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSGAFSRSGSGRGFGRGRHPFNNRGNFNRGRSFYHGGHSQIGRVGFRDDRDFNMYPDFHQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRAWGGIPDGGPSEPIPPRRPYSPGGQFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRQHDSFGPGSRQYPPDYYGSDYGRGSYSSYYGGEGYQGSHGRGYYY 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01112 919 MobiDBLite consensus disorder prediction 47 70 - -
Cca11g01112 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 597 677 IPR000504 GO:0003723
Cca11g01112 919 SUPERFAMILY RNA-binding domain, RBD 420 564 IPR035979 GO:0003676
Cca11g01112 919 CDD RRM_SF 501 564 - -
Cca11g01112 919 MobiDBLite consensus disorder prediction 196 324 - -
Cca11g01112 919 MobiDBLite consensus disorder prediction 173 402 - -
Cca11g01112 919 PANTHER NUCLEOLIN-LIKE ISOFORM X1 294 911 - -
Cca11g01112 919 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 294 911 - -
Cca11g01112 919 MobiDBLite consensus disorder prediction 372 397 - -
Cca11g01112 919 MobiDBLite consensus disorder prediction 121 153 - -
Cca11g01112 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 584 IPR000504 GO:0003723
Cca11g01112 919 CDD RRM_SF 421 489 - -
Cca11g01112 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 419 497 IPR000504 GO:0003723
Cca11g01112 919 Gene3D - 357 493 IPR012677 -
Cca11g01112 919 SUPERFAMILY RNA-binding domain, RBD 588 702 IPR035979 GO:0003676
Cca11g01112 919 CDD RRM_SF 599 673 - -
Cca11g01112 919 Gene3D - 498 583 IPR012677 -
Cca11g01112 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 572 IPR000504 GO:0003723
Cca11g01112 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 599 665 IPR000504 GO:0003723
Cca11g01112 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 421 489 IPR000504 GO:0003723
Cca11g01112 919 Gene3D - 586 741 IPR012677 -
Cca11g01112 919 MobiDBLite consensus disorder prediction 1 91 - -
Cca11g01112 919 SMART rrm1_1 420 493 IPR000504 GO:0003723
Cca11g01112 919 SMART rrm1_1 598 673 IPR000504 GO:0003723
Cca11g01112 919 SMART rrm1_1 500 577 IPR000504 GO:0003723
Cca11g01112 919 MobiDBLite consensus disorder prediction 865 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01112 Cca-Chr11 27101735 27109710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01112 421 665 Eukaryotic Initiation Factors Gene Family AT2G23350 23.810 6.69e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01112 - - gmx:100784338 1266.14