Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01111 ATGAAGCGCTTGAGGAAATCCAACAGGGTTTCGTGGGCTACTGGAGTGAACCTGTGTCAGGTAAAATTGTTCTTGTCTGACGATTACCCCTCAAAAGTTGGCCATAAATTGCAAGATCATCTTCAAGCAAAGGCATCATCGATGTTACATTCTAGTATGAGTGAACCTAATGATTTACCCCCTGGGTTTGAAAGCAGTCATTTCCGAAACCAATCGAAGGTTGAACTCTCCTGTATAGCCCAGACAAAATGGGAATGCCCTGCACCGTTTGTTGTCAGTTCTCATTGGCGTGTTGCAGCTGGTGAAGAAAGTAGGGAAAAAGAGGACCAGAAACTGAGAGAAATGAGAGTGCTCGAAGCGGTTTATCCCCGGCTTTCTGCCATTCCTCCTAGCCCTACTGTCTCCTTGAATGTAGAAGAGGAAGATTATGATGATAACATTACTCCTCTCATCCCGATCATTCCCATTGAAGAGGAAGAATCTATGGATATTTTGCCTGAATTTTCAGTAGAAGTGAACCCTTCCCCCAATGTGCAGTTGCAGAACTCTCAGCAGTATATGTCTGCTACAAATTCAATTAGTTCAGCTTCTAATGCCTCTCATAAAGTTTCTCTGGATACCTGTTTAAAGCCCCTAGCTGGGGAATCATCTGGTTTGGAAGCAGATATAGTAGCAGCCTCTTCCGTTGTAGCAACCATTATGAGTAGTAACGAGCAAGGACGCCTCATTGATATGGACTTACTGGTTAAAATATTCAATGATCCAAAAGTAATTGAGAAGTTGATTAATGAACATACAACTGCAACTACCACCTTAAGTGCTTCCTCAAATACGGTGGATATACCCTCTTCAGGTGTGAAGCCTGCTATTCCATCAGCTCTGTTGTCTACATCTACTCCTGATGTGATAGCTTCTAGGGCTACACACTCAAGTACAGGGGTTTTTTTGCCTTCTGGGTTGAAGCCTGCAAATCCATCAATTTCATTGTTGAATCCTACACTTGATAAGCCAGCCACTCTGTCAGTGGCTGCAATTCCACCAATTTCACTATTGTCTTCTACACACGAAAAGCTGGTAACTGCATCAGTTCCATTGTCTAGGCCTGTGTCTGGTAAGCCAGTAACTCCCCCAGTTTCAATGTTTACACCTTCACCTGCACCTAATATGCACAGGTCTATCAGCAAAAATTTTCACCATGTGACAAGTGGAATGTCCCCTGCCTTAAATACCCAGTCTCAGCAGGATACAGCTCTGGCATCTGGGCCTAAGCGAGCTGCATCAGTGGCATCCATATCTTCCAGTGAGTTAAACCCAGGTCCATTGCCATCTACTACTGGGAACTTGCACGCAGTTGGGAATCAGGTGCAATCAGCTGCTAGTACAGTGCCTTATAAACTAAGTACAGGTTCAGCATTTGCTGTAAAGGATGCCAACTATTATAAAAACCTCATCAGGCAACATGGTGCAGATAGGCAAGATATGCAGGACTCACACATAGGTATCCGTCATAGTAAATTCCAAGATATGAAACCGGTACATAACTTAAAACAAGGAGAAGTGAACCACAAAATCCAGAAACCATGCATATATTTTAAAAGCTCAAGGGGGTGCCGAAATGGTTCCAATTGCCCCTATCTGCATGATATTCCAGCTCAGTGGGGAGCTGGTAACGTCTTAGGGGCACAGAGTGCAAAAAGACTGAAATTGGGATCAGAAATTTAG 1722 0.4367 MKRLRKSNRVSWATGVNLCQVKLFLSDDYPSKVGHKLQDHLQAKASSMLHSSMSEPNDLPPGFESSHFRNQSKVELSCIAQTKWECPAPFVVSSHWRVAAGEESREKEDQKLREMRVLEAVYPRLSAIPPSPTVSLNVEEEDYDDNITPLIPIIPIEEEESMDILPEFSVEVNPSPNVQLQNSQQYMSATNSISSASNASHKVSLDTCLKPLAGESSGLEADIVAASSVVATIMSSNEQGRLIDMDLLVKIFNDPKVIEKLINEHTTATTTLSASSNTVDIPSSGVKPAIPSALLSTSTPDVIASRATHSSTGVFLPSGLKPANPSISLLNPTLDKPATLSVAAIPPISLLSSTHEKLVTASVPLSRPVSGKPVTPPVSMFTPSPAPNMHRSISKNFHHVTSGMSPALNTQSQQDTALASGPKRAASVASISSSELNPGPLPSTTGNLHAVGNQVQSAASTVPYKLSTGSAFAVKDANYYKNLIRQHGADRQDMQDSHIGIRHSKFQDMKPVHNLKQGEVNHKIQKPCIYFKSSRGCRNGSNCPYLHDIPAQWGAGNVLGAQSAKRLKLGSEI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01111 573 ProSiteProfiles Zinc finger C3H1-type profile. 523 550 IPR000571 GO:0046872
Cca11g01111 573 MobiDBLite consensus disorder prediction 405 448 - -
Cca11g01111 573 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 569 - -
Cca11g01111 573 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01111 Cca-Chr11 27020516 27025708 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g01111 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01111 - - gmx:102661587 829.32