Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01095 ATGGGAATTTGCCATTCCGCCACCAAAGTTAGCAGCTccatcggcaacgccaacgacaacgccaatggtaacgccGTCACCGTCATTCAAGGCGGCAAGGGGACCGCGAAGCCGAAATCGGAGACGGTAAAGGCGAACCGTCGACGGCGCAAGGCGAGTCCGAAGAAGAGGCCATGCGGTAAGCGCACTGAATTCGGTTACGAGAAGGATTTCGATAAGCGTTACTCGCTGGGGAAATTGCTAGGACACGGCCAGTTCGGTTACACCTATGTCGGAATCGACAAAGCCAATGGCGATCGCGTCGCAGTTAAGAGGCTCGATAAGAGTAAGATGGTTCAGCCTATAGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATTTTGAAAGCACTCGCTGGTCACGATAATGTGGTTCAGTTTTATAATGCTTTTGACGATGATTCTTACGTGTACATAGTTATGGAGTTATGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGAAAGTCGTTACACTGAAAAGGATGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTAAATGGTATGGTGCACCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTATCAGATTTCATAAAACCTGGAAAGAAGTTTCATGATATGGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTAAAACGTAAGTCAGGCTCTCAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGTTGTGTGGAAGGCGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAAGAGGTCTTACGTAAGAAGCCCGATTTCCGTCGGAAACCATGGCCAACTATAAGTAATGCTGCAAAAGATTTTGTTAAAAAATTATTGGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATCACATCCATGGGTTAGAGAAGGAGGGGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGGCAGTTTGTGAAGTATAGTCGATTGAAACAGTTTGCACTGAGGGCATTGGCAAGCACACTTAATGAAGAAGAGCTGGCTGATCTAAAAGATCAATTTGACGCTATAGATGTGGACAAAAATGGTTCTATTAGCCTGGAAGAGATGAGACAGGCTCTTGCCAAAGATCTTCCTTGGAGGTTGAAAGAATCACGTGTGCTAGAGATATTGCAAGCGATAGACAGCAACACTGATGGGCTAGTGGATTTCCGTGAGTTTGTAGCAGCTACATTACATGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCGGCACCTGTCACTGTCTGCTTTTGAGATATTTGACGTAGATAAAGATGGCTATATTACTCCAGAGGAACTTAGAATGCATACAGGCTTGAAAGGCTCCATTGATCCTTTGCTCGAGGAAGCTGATATTGACAAAGATGGGAAAATCAGCCTACCAGAGTTTCGTAAACTTCTAAGAACTGCAAGCATGGGTTCTCAAAAGATTTATACCGCATGTGGCTATAGTTTGTGTAGACCCTGCGTGGATTGGCTTCAGAAAACGACTGCAGCCTGCTGTTCTTAG 1653 0.4356 MGICHSATKVSSSIGNANDNANGNAVTVIQGGKGTAKPKSETVKANRRRRKASPKKRPCGKRTEFGYEKDFDKRYSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLDKSKMVQPIAVEDVKREVKILKALAGHDNVVQFYNAFDDDSYVYIVMELCEGGELLDRILAKKESRYTEKDAAVVVRQMLKVAAECHLNGMVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKKFHDMVGSAYYVAPEVLKRKSGSQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRKKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEELADLKDQFDAIDVDKNGSISLEEMRQALAKDLPWRLKESRVLEILQAIDSNTDGLVDFREFVAATLHVHQLEEDSDKWRHLSLSAFEIFDVDKDGYITPEELRMHTGLKGSIDPLLEEADIDKDGKISLPEFRKLLRTASMGSQKIYTACGYSLCRPCVDWLQKTTAACCS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01095 550 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Cca11g01095 550 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Cca11g01095 550 SUPERFAMILY EF-hand 364 517 IPR011992 -
Cca11g01095 550 ProSiteProfiles EF-hand calcium-binding domain profile. 464 491 IPR002048 GO:0005509
Cca11g01095 550 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Cca11g01095 550 ProSiteProfiles EF-hand calcium-binding domain profile. 494 521 IPR002048 GO:0005509
Cca11g01095 550 Gene3D - 376 445 - -
Cca11g01095 550 CDD STKc_CAMK 74 334 - -
Cca11g01095 550 Pfam Protein kinase domain 75 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01095 550 ProSiteProfiles Protein kinase domain profile. 75 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01095 550 Gene3D Phosphorylase Kinase; domain 1 68 160 - -
Cca11g01095 550 MobiDBLite consensus disorder prediction 1 63 - -
Cca11g01095 550 MobiDBLite consensus disorder prediction 43 57 - -
Cca11g01095 550 Gene3D Transferase(Phosphotransferase) domain 1 161 355 - -
Cca11g01095 550 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Cca11g01095 550 Pfam EF-hand domain pair 382 444 IPR002048 GO:0005509
Cca11g01095 550 Pfam EF-hand domain pair 464 515 IPR002048 GO:0005509
Cca11g01095 550 SUPERFAMILY Protein kinase-like (PK-like) 72 347 IPR011009 -
Cca11g01095 550 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Cca11g01095 550 SMART efh_1 382 410 IPR002048 GO:0005509
Cca11g01095 550 SMART efh_1 460 488 IPR002048 GO:0005509
Cca11g01095 550 SMART efh_1 490 518 IPR002048 GO:0005509
Cca11g01095 550 SMART efh_1 419 447 IPR002048 GO:0005509
Cca11g01095 550 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Cca11g01095 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 525 - -
Cca11g01095 550 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Cca11g01095 550 SMART serkin_6 75 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01095 550 Gene3D - 356 514 - -
Cca11g01095 550 CDD EFh 382 443 IPR002048 GO:0005509
Cca11g01095 550 CDD EFh 464 516 IPR002048 GO:0005509
Cca11g01095 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Cca11g01095 550 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 16 33 525 - -
Cca11g01095 550 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01095 Cca-Chr11 26305844 26317715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01095 1 535 EF-hand Containing Proteins AT2G17890 72.408 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca11g01095 Pkinase 1.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01095 K13412 - gmx:100798941 929.858