Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01092 ATGGAGGTCGAGGCACAAATCACACATGATTCAGATACTCAACTCCAGCCAGAGACTGTTGTTTCAGTTCAAAATGGGAATCCTGGTGTTTCCTCAGCTGTTGCAAATGCTGTTAACCCACAGCAGCCAGCTACAAAAAAACCGACCAGGCAGTGGGCTGCGTGGACTCGACAAGAGGAGGAAAGTTTCTTCACCGCTTTACGACAAGTTGGGAAGAATTTTGAGAAAATTACTTCCCGTGTACAAAGTAAAAACAAGGATCAGGTCAGACATTATTACTACCGGCTTGTGAGACGAATGAACAAACTTCTTGGTCCAGGATTATGTTTGGATGCCAAAAACTCCAAAGATACTAATGCTGCAATGCTTCGCTGGTGGTCGTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCATCTGAAGCCACGCAGATTTAAAATTTTTTTAGAAGCCTTGGAGCACCAACTTTTGAAGGACCGGAAAAAGAATGTAAGGAAGCGATCCTTACAGGGGGGGAATTGTCTTTCTCCTGTTCCTACTCCAGTCTCAAATCAAAGTAGAGCATCAGGAAATGATGCTCGTGCAGTTAAACTGGTTCTTGTTGACAGTCAAAATATTTTAAAATTGGGGCCTTCTAAACCATCAATGAAGCGCAGTATAAACATGGGTGTTAACCGTAGTAACACTAAGGGAGATTCAAATGCCATGAAACCAACAAGGCAACGAAAGAAATCTGGTGTGATTTCAACAGCTGCATATAAAAAATGGGAAAAGGCTGCAATTGCTGGTGTTTCTTTAGTTGCAGATGCTGCTGAGCATTTGGAGCGAGCTGCAACTGTTAGAGAAATTGAACAAGACCAGGAGAATCCAGGAGAAAAATGTTCTGACCCTGTTGATTATGTCCTGCCCTCTGTACCCACATGTCCACAAAATCAATTTGTTGATAACTATGTGAATATTAACATGAAACTGAAGCTCCAGTTATTCCCAATTGATGAACCTACTCGAAAAGCATTGGAAATGGATAAGCATAATCCACACTTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGTATAGCAGTTGGAGAATTAATGCTTTTTCCTTATGGTACTCAAAGGGAAAACTTGGTTAATTATCAGAGATGGACCCAGGAATCTACTCTTAGTGCAGCAGATATATATGCAATGATTGGAACTCCACCCATATTCCGTTTAAGGTATGGTTGGTTCTCCAATACTGAGCTTGGGTTATTAAATATGCAAGTGCCTGTGGCATCCAGCTGCATGCTCAGACAGTCCAAAATTAGTGTGGACAATACTGAGGATCAGATTGTGAATTCTGTTTCAGCTCCTATGCTATCAACTAATACTCATTCCATGGAGCTATCTGAAGATTGCAGAACATCCATGAACAAAAACCATACTTTTATCAATGCTTCAACTGATTTGCCTAATACCAGAGACAACAGTGTTTACCTGAATACAAGCATTGAGGAATGTCGTGATCCTACAGCCAATACATTGTGGCATGGAAAAGATGTTACAGATGGAGCTGTTACTTCACAGTTGGAAGAAATGGATGAGTTGAAATTAAGCAGTGGAACAGGACTGTCAGCTGGAGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGATCTACTTTCAGGAGCGTCCCAGGATCTCGAAGATAACTGCATCAATCCTCCTAGTGCTGAGAATTGTCACGATGTTCAGCAAATTCCTTTTAGTAGTGATTCTTTCGATGCCGCAATTGCTGCTCACATATCTAGACACCAAGACAAGATGGGACAACCATCAATGGCATCCCATATGTCTTCCATTTGGGATGCTGAAGAAACTTGTGATGCCTTTTTATTTAAAAAGGATCCTATTCTTCACAAAGATGGTCCTTGTTTATCTTCAGTTGCTTCTTTAGTGTCCGAGAAAAAGGTTCCTGAAAGTAGCTTTGAAAAATTGGATGAGTTGTCACCTGATGAAGAGAGGCTTGTGGATGATTTTGTTCAAACAGACCCTATGCCTATCGACAGTTGTGAGTCTGATTCAGATATCCAGGACCATTTAGGAAAGGGTATTAGTGCGCTAGCAGACATGTATTGGCCTGATTCCTTGGGACCGTTGGATTTGGATATACCATCAACTAAGTATCACAGCGAAGATCTAATTTTTAGTGATAGTCTTAGTGGACTGAATCGCTTGATAGCCAGCAGCCTGGATGCATTCCAGAATTGCTCCTTTTTTGGATTTGACAAGAAGGAAGCACCATCAACAGTTGAGGCTCGAGAATCTGCAGCTCTTTCAGATTTTAAAATTGGAAGTGGCATCTGA 2397 0.4126 MEVEAQITHDSDTQLQPETVVSVQNGNPGVSSAVANAVNPQQPATKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKNVRKRSLQGGNCLSPVPTPVSNQSRASGNDARAVKLVLVDSQNILKLGPSKPSMKRSINMGVNRSNTKGDSNAMKPTRQRKKSGVISTAAYKKWEKAAIAGVSLVADAAEHLERAATVREIEQDQENPGEKCSDPVDYVLPSVPTCPQNQFVDNYVNINMKLKLQLFPIDEPTRKALEMDKHNPHLELTLSTRKKISSILEHLNRKWGNSSIAVGELMLFPYGTQRENLVNYQRWTQESTLSAADIYAMIGTPPIFRLRYGWFSNTELGLLNMQVPVASSCMLRQSKISVDNTEDQIVNSVSAPMLSTNTHSMELSEDCRTSMNKNHTFINASTDLPNTRDNSVYLNTSIEECRDPTANTLWHGKDVTDGAVTSQLEEMDELKLSSGTGLSAGEWADSLTNISVGDLLSGASQDLEDNCINPPSAENCHDVQQIPFSSDSFDAAIAAHISRHQDKMGQPSMASHMSSIWDAEETCDAFLFKKDPILHKDGPCLSSVASLVSEKKVPESSFEKLDELSPDEERLVDDFVQTDPMPIDSCESDSDIQDHLGKGISALADMYWPDSLGPLDLDIPSTKYHSEDLIFSDSLSGLNRLIASSLDAFQNCSFFGFDKKEAPSTVEARESAALSDFKIGSGI 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01092 798 MobiDBLite consensus disorder prediction 212 247 - -
Cca11g01092 798 Pfam Myb-like DNA-binding domain 54 96 IPR001005 -
Cca11g01092 798 MobiDBLite consensus disorder prediction 219 236 - -
Cca11g01092 798 MobiDBLite consensus disorder prediction 170 190 - -
Cca11g01092 798 PANTHER CRAMPED PROTEIN 15 774 - -
Cca11g01092 798 MobiDBLite consensus disorder prediction 162 190 - -
Cca11g01092 798 SUPERFAMILY Homeodomain-like 47 101 IPR009057 -
Cca11g01092 798 SMART sant 51 99 IPR001005 -
Cca11g01092 798 PANTHER PROTEIN CRAMPED-LIKE 15 774 - -
Cca11g01092 798 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Cca11g01092 798 CDD SANT 54 97 IPR001005 -
Cca11g01092 798 ProSiteProfiles SANT domain profile. 55 101 IPR017884 -
Cca11g01092 798 Gene3D - 4 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01092 Cca-Chr11 26249204 26256429 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca11g01092 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01092 - - gmx:100798411 1387.09