Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01083 ATGGCGGAAGAGAGATTCACGGGCGTGGTGCAGTGGTTCAACAATATCAAGGGCTTTGGTTTCATCAAGCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCAGATCCGACGGCTACCGCACGCTCCTCGAGGGCGATCGCGTCGAGTTCTGCATCGCCACCGGCGACAACGACAAGACTAAGGCCGTCGACGTCACTGGCCTCCACGGCGCCCCGCTCCAGCCACGCGCCGCCGCCGGCAACCGTGGCCCTGCCGGCTACGGCTTTGGCGCCCGCCGCAACGGCTCCGGCGCTGCCTGCTACCAGGAGGCAGCGGCGGCGGAGCGGGCGGTGGTGGGGGTTGTTTTCGGTGCGGGGAGGTTGGGCATTTGGCTAGGGATTGCGGCGTTGAAGGAGGGAGGTTCggtggtggtggcggtggtggtaacggtggtcgtggtggtggcggtggAAATAGCACGGTTGTTGGAGAGAGGAGGGGTTACGTTTTGCGAAGGGAGAAAAAGATGGTGTCGTTTACAACTCATTGTCATGGGGTTGGAGTTGAGAAATTTGGGGTACCCGTAG 579 0.5717 MAEERFTGVVQWFNNIKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFCIATGDNDKTKAVDVTGLHGAPLQPRAAAGNRGPAGYGFGARRNGSGAACYQEAAAAERAVVGVVFGAGRLGIWLGIAALKEGGSVVVAVVVTVVVVVAVEIARLLERGGVTFCEGRKRWCRLQLIVMGLELRNLGYP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01083 192 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 122 - -
Cca11g01083 192 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Cca11g01083 192 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Cca11g01083 192 PANTHER COLD SHOCK PROTEIN 2 1 122 - -
Cca11g01083 192 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Cca11g01083 192 Gene3D - 1 82 IPR012340 -
Cca11g01083 192 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Cca11g01083 192 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Cca11g01083 192 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Cca11g01083 192 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Cca11g01083 192 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Cca11g01083 192 SMART csp_8 7 72 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01083 Cca-Chr11 26026335 26028703 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Cca11g01083 CSD 5.1e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01083 - K09250 gmx:100806783 176.407