Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01065 ATGGGTACTAATTGCAGACACGTTTTTGATAGATTACATAACTTTGCCACTTGTTGGAAGAAAAGAAGCACGCCAACTGGCAGAAGAATTTTCCACAGGGATGTAGAAAAGGAAGAATTCCAGTATGCAAGCACTCAATGTCTCTCATCATACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCCATGCTAGCTATCTTGATTGGTCTTCTCACTTTCCTGACATGGCATTTCACAAAGATTTATACAACAAAATCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTTCCGAAATTACAACTGCTCAGGTTAAACTGTCTCAGTATGTGATCAGAAGCCACACCAACCTTGCCACTCATGCAGACCAAGTTGAGATGTATGACGCGATGAGGGCTGTAACATGGGCACTGTTTGCTAGTAAAAGAGCTCTGAATTCAATAACTGTCAAATACAAGAATGGATTTGTTCAAGCATTCCATAGAGACCTGAAGGATAACAATACCTTTTACATTTATTCTGATCTTGCAAATTACTCCATGGCTGCCGGTGGATACAATGAAATCAACTCGCTTTCACCACATGAAGCTTGGAATGATAAAGACATTCATGGTAACAAGTCTGCGATTTGGTATCGCGAACCACTTGATCCTGTCAGTGGTGAAAAGACTGGAAAAGTAATGCCAATTGCACCAGAAGACTCAATCAACATAGCTGGCCTCTCCCAAGTACCTGATGGCGTAGCTTCGTGGCACGTTGCTGTGAGCAAGTTTACAGATTCACCATTGCTTTCTGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGCATTGTGGCAGTTGTAGGTGTCACAACAGCACTTTATAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGTTGCACAGTGGCCACATGTATTTGACCTCCCGAGAGGGTTACTTACTTGCAACTTCCACAAACGCACCTCTACTGTCAAATTCTACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGGGCTCAGTGGCTACAGAAAACCTATGGGAACAATTCCCCTCAGAGTCATGAGGTTCATGTAGAGAATGTCAAGCTAGGCCACCAACAATATTACATTGATTCGTTCTTCCTAAACTTGAAGAGGCTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATAGGATGTGTTTGTATTTTGATATTAACAAATGGGGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATAAGTCACCTGGAAGCAAGAAGGAAGGCAGAGGCATCTAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGCGGACACCAATGGCTGCAGTAATCGGGTTACTTGACATTCTTATATCTGATGATCATCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCCCTGCTCCGTCTACTGAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGATACTAGAAGATGCCGAATTTGATTTGGGACGCGAACTTGAAGGACTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACCGTCTTAGACCTGTCTGATGATATGCCAAAGCTAGTCCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCGATTAAGTTTACTATATCGGGTCACATTATTTTGAGAGGATGGTGTGAAAACCCAAATTCTTGCAGTGATGATACAAATTTTCCACTAGAGCAAAAGAAATCACGGTGTTCACAAAaaaccaaagcaaagcaacatgaaaacaatgcaaagAGGATTTCTAATAGAGATAACAAAATGAAACTTTGGTTTGAAGTTGATGACACAGGATGTGGTATTGACCCAAGCAAATGGGAATCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCACGGAGGCACTGGTCTTGGTCTTTGCATCGTCAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGACCAGGAACACTGATGCGGTTATACTTGCGCCTCAGTGCACCTGTGGATACCACAGAACAACATTGTCAAGAAGATTTTGCTAACAAAGGCTTAGTGGTACTGCTTGCACTACATGGCAACATGGGTCGATTAGTTACATCCAAGTGGTTACAGAAAAACGGGGTAGTCACTATGGAAGCATCTGAATGGAATGGATTAACACAAACTTTGAGGGTACTATTTCATGCAAGAAGTTCAGCTCATCATAATGGTTTTGATGGAAATTATTCAATTCATGACAATTTAAAGTCAAAACTACTGAGCATACAGGAATTGAGAAACCCAGTTTTTGTCATTGCTGTTGACATTGGGCTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTCAACTTCCTTCACAAATACTTTGGGAGAGCAAAGTTTGTATGGATACTAAACCATGATTCCTCCAATACCATTAAGATGGAGCTTTGCAAGAAAGGACATACACTGACTGTGAACAAACCCTTTTACAAAACAAAAATGATTCATATTTTGGAAGCCATCATAAAGGAGAGAAATGATGAGCTACAAAAGAAAAATATGACTACTCCAAGAGCTACATTGAAAGAGGGTGACTTGCATGAGAGCCTTGAGATTGATTATACTCAATGCGATGTTGCAAGCTCAGATGGTTCTGACATATCTGAAGTGGGTGGTTCTAATCCTGTTAGTGTTAGTGAAGATAAACAAAGAGAGAAAATAATGAGATCCAATCCATCATCACAGCACCAGATAAATAACTTAGTTGGATTAGCAAATGAATATATGGAAGATAATAATCCTAGGAAGGAAGAGTTATCACAGAGTAGCCTCAACTCTAATGATGTCACTACAAACGCAATACCAAAATCATCCTCGACTAAACAGACATCCTTTGCAACAGGAGCTCAAGGTGAAGATTCTGAATCTAGTGAAGCACGTAGGGCCAGTAGCTCAAGTAGAGCAGTGAGTGGAAAGAAATCTCTTGAAGGCCTGAGGATATTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTAGCTGTAGGAGATGGACAACAGGCAGTGGATGCTCTGAATGGCATGTCTGGTGTTGAAGATTGTAGAAGGGAGTCTCTTCTAAAGGAAAGAAACACAAGATCATCTCAACCTGAGATTCTCAGTTACCCTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCAGAAGTGGGAACTGACATGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACAAGAAGAACATCATGA 3681 0.4051 MGTNCRHVFDRLHNFATCWKKRSTPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRSHTNLATHADQVEMYDAMRAVTWALFASKRALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSMAAGGYNEINSLSPHEAWNDKDIHGNKSAIWYREPLDPVSGEKTGKVMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSREGYLLATSTNAPLLSNSTKPPKLKMAVDCENEVIREGAQWLQKTYGNNSPQSHEVHVENVKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDHLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLILEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTISGHIILRGWCENPNSCSDDTNFPLEQKKSRCSQKTKAKQHENNAKRISNRDNKMKLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPVDTTEQHCQEDFANKGLVVLLALHGNMGRLVTSKWLQKNGVVTMEASEWNGLTQTLRVLFHARSSAHHNGFDGNYSIHDNLKSKLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDSSNTIKMELCKKGHTLTVNKPFYKTKMIHILEAIIKERNDELQKKNMTTPRATLKEGDLHESLEIDYTQCDVASSDGSDISEVGGSNPVSVSEDKQREKIMRSNPSSQHQINNLVGLANEYMEDNNPRKEELSQSSLNSNDVTTNAIPKSSSTKQTSFATGAQGEDSESSEARRASSSSRAVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMSGVEDCRRESLLKERNTRSSQPEILSYPPYDLILMDCQMPKMDGYEATKAIRKSEVGTDMHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTS 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01065 1226 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Cca11g01065 1226 SMART REC_2 1075 1218 IPR001789 GO:0000160
Cca11g01065 1226 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Cca11g01065 1226 CDD REC_hyHK_CKI1_RcsC-like 1077 1218 - -
Cca11g01065 1226 MobiDBLite consensus disorder prediction 1010 1067 - -
Cca11g01065 1226 SMART HKATPase_4 596 748 IPR003594 -
Cca11g01065 1226 Gene3D - 471 550 - -
Cca11g01065 1226 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 745 IPR036890 -
Cca11g01065 1226 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 746 IPR003594 -
Cca11g01065 1226 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Cca11g01065 1226 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Cca11g01065 1226 ProSiteProfiles Response regulatory domain profile. 1076 1222 IPR001789 GO:0000160
Cca11g01065 1226 Gene3D - 551 749 IPR036890 -
Cca11g01065 1226 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Cca11g01065 1226 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Cca11g01065 1226 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Cca11g01065 1226 PRINTS Bacterial sensor protein C-terminal signature 732 745 IPR004358 GO:0016310|GO:0016772
Cca11g01065 1226 SUPERFAMILY CheY-like 1073 1224 IPR011006 -
Cca11g01065 1226 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1223 - -
Cca11g01065 1226 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1223 - -
Cca11g01065 1226 MobiDBLite consensus disorder prediction 1015 1050 - -
Cca11g01065 1226 MobiDBLite consensus disorder prediction 958 995 - -
Cca11g01065 1226 Gene3D - 1052 1221 - -
Cca11g01065 1226 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 470 550 IPR036097 GO:0000155|GO:0007165
Cca11g01065 1226 Pfam Response regulator receiver domain 1146 1215 IPR001789 GO:0000160
Cca11g01065 1226 MobiDBLite consensus disorder prediction 958 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01065 Cca-Chr11 25396713 25404387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01065 6 1223 Histidine Kinase Gene Family AT2G17820 64.175 0.0 1558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca11g01065 HATPase_c 7.3e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01065 - - gmx:100801970 2204.87