Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01040 ATGTTGCTGGAATTTATTGCTGGCATTTTCACAACCATGGTACTGGCCTCACTCTATTTCCTCTTCAGGAGAAAGGTCATTCCATTTCTCAAGTCTTTGAAAGGAAAGGAGCAGAGCAGCTTTAAATATGACAAAATATCATTAAGGCATTTTGATTTTCAGGAACTAGAGAGAGCCACCAAAAATTTTAGTCAAGATTGCTTGTTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACCTTTGACTTAGAAGGAACACTAGCCATCAAGAGAGCTCATTCTGAATCATTCTCAACTGTGGAAGAATTCAGAAATGAAGTTAGGCTCCTTTCAGCTGTAAAGCACAAGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACGAGGTGGAGCCAAAATACTAGTCTATGAATATGTTCCAAATGGTTCACTGCTCGAGTATATCATGGGAAACAGAATGAGCTTAACTTGGAAGCAAAGAGTAAACATAGCAAATGGAGCAGCAAGAGGCATAGCTTATCTGCATGAAGGGGTGAAGCCAAGCATAATACATCGCGACATCAAACCAAGTAACATCCTATTAGGGGAAGGTTTTGAGGCTAAGGTTTCAGATTTTGGACTAGTAAAATCAGGGCCAACTGGAGATCAGTCACATGTCAGCAGCCAGATTAAGGGGACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGACGTTTATAGCTTTGGTATCATACTTCTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCACTGAAAAACAAAGTATTCAACATATTATTGACTGGGCAAGACCAAGCTTAGAGAAGGGTAGTGTTGAAGGAATCATGGATGCAAATCTACTATGTCAAAGTGAGGCATGCAACATGGAAGTTATGCTAAAGATGGGGCAACTTGCTTTAAGATGTGTGGTTGAAGAACCAAAACAACGACCTACAATGACCCAGGTGTGTCAAGAATTGGAGCAAGCCCTCTACTCAGCTGATAGCTTCAATAACAAGCAGTCTTCAAAGGAATTCTTTACACCAACTGGCTCATCCCAGCCATCAACAAATTCAGAGTCTCAGGGATCAGTTGATTTATACGATTGTTCACAAAGCTTTGTTAGTATTAACGGTGTTGGATTTCAGAAATTTCATGTTGATATTGATAGTTTATCCTTTAAGAGCACAGACTTAAGGTGTCTAGAAAATAATAGTATTAGTATTGACATGGATAGAATTTAG 1278 0.3983 MLLEFIAGIFTTMVLASLYFLFRRKVIPFLKSLKGKEQSSFKYDKISLRHFDFQELERATKNFSQDCLLGSGAFGNVYKGTFDLEGTLAIKRAHSESFSTVEEFRNEVRLLSAVKHKNLIGLVGYCEEPERGGAKILVYEYVPNGSLLEYIMGNRMSLTWKQRVNIANGAARGIAYLHEGVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGIILLQLVSARPVVDSTEKQSIQHIIDWARPSLEKGSVEGIMDANLLCQSEACNMEVMLKMGQLALRCVVEEPKQRPTMTQVCQELEQALYSADSFNNKQSSKEFFTPTGSSQPSTNSESQGSVDLYDCSQSFVSINGVGFQKFHVDIDSLSFKSTDLRCLENNSISIDMDRI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01040 425 Pfam Protein kinase domain 66 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01040 425 Gene3D Transferase(Phosphotransferase) domain 1 142 361 - -
Cca11g01040 425 MobiDBLite consensus disorder prediction 354 374 - -
Cca11g01040 425 PANTHER OS01G0750732 PROTEIN 10 385 - -
Cca11g01040 425 SUPERFAMILY Protein kinase-like (PK-like) 48 362 IPR011009 -
Cca11g01040 425 ProSiteProfiles Protein kinase domain profile. 63 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g01040 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Cca11g01040 425 CDD STKc_IRAK 69 340 - -
Cca11g01040 425 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Cca11g01040 425 Gene3D Phosphorylase Kinase; domain 1 27 141 - -
Cca11g01040 425 SMART serkin_6 63 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01040 Cca-Chr11 24650706 24653808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01040 29 360 Receptor kinase-like Gene Family AT2G21480 42.090 8.77e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca11g01040 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01040 - - gmx:106794267 733.021