Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01037 ATGGACTTTGTGCCAAATCAATGCCCTATGAAGGGTTCCTTGAGGAATTTCGTTGAGAGGGTCAAAAGGGTTGGTACTCTCTCCGTCTCTACCATCATTGGGAACATCCTCTCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGAACTTTGTTGGGGGGCATGACTGGAGCCTTTATTGGTCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCAGCTATTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTGGAATCTTCTCTTGTTCTTTGGAAATCTGATGAATCTGGAATTGGGTGTGTTTTATACCTGATTGATGTTATTGCTAGCTTATTGAGTGGAAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAATGAGCTTTGATGACGTTCAAAACATCTTTGACATTGGTGGCTCCAAAGGTTTGTCGGGAGATTCAGTTGAGAAGATCCCAAAGACCACAATTACAAGTGACAAAAATGTTGATGCTTCTGGGGAGAGAGTTTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGATAGTTAGAAATTTGCCTTATTGTCATCACATGTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCGTGCCCATTATGCAGAAGAGATCTTTAA 696 0.4397 MDFVPNQCPMKGSLRNFVERVKRVGTLSVSTIIGNILSAILTFCFALVGTLLGGMTGAFIGQETESGFIRGAAIGAISGAVFSIEVLESSLVLWKSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEMSFDDVQNIFDIGGSKGLSGDSVEKIPKTTITSDKNVDASGERVSCSVCLQDFQLGEIVRNLPYCHHMFHLPCIDKWLIKHGSCPLCRRDL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01037 231 CDD RING-H2_PA-TM-RING 186 228 - -
Cca11g01037 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 13 231 - -
Cca11g01037 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 231 IPR013083 -
Cca11g01037 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Cca11g01037 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 231 IPR044523 -
Cca11g01037 231 SUPERFAMILY RING/U-box 185 231 - -
Cca11g01037 231 Pfam Ring finger domain 185 228 IPR001841 -
Cca11g01037 231 SMART ring_2 186 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01037 Cca-Chr11 24594744 24596939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01037 18 231 C3H Transcription Factor Family AT5G66070 73.364 1.34e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01037 - - gmx:100816939 402.905