Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01033 ATGGAGTTTGATCCATGTTTCCAAGGGTCACAACAACTTCAAAACCCTTGCTTTAAGCCACAACCTCAAACCACATATCCCTCCCAAAATTCCATTCTTATCCCACCATCACCACTGCCAATCTTATTCCAACCCCATAATACTTTTCACCATTTTCAAGAACAAACTATGACTATGTCTTCCCACAGCATTGCCTCAATGAAGGAAGGTCCTTCTTCCACCAACATCCCAATTCCCTTGTATGGGAAGATGCCAAGCCTTTCTTTGAGTGATGGGTCTTTACTAAGAGGAAGTTTTGCTAACATTCATAGTCAGCTCCCTGCGATGCTACCACCAAACCATAACAATAAAGATGTTTTCCATGACAATCATCACAAAGGGAAAGTCATTTGGGATTTTTCACAAAAAACCATGGTTCATCCATTTGAAGGTTCTTCATCCAATTCACCATCACCTCTTTTTAATGAGTATGAATTGGTGATGAGTGATTATCATTGGGACACTGATCAAAGGAAGAAAAATGTAAAGGGTAAAAAAGATACCAACAATAATAACATAATCAAAGGGCAGTGGACTCCAGAAGAGGATAGTGCACTTATGGAATTGGTGAATCAATTCGGGCCGAAGAAATGGTCGCAAATTGCAAAGTCATTAAGTAGCAGAATTGGGAAGCAGTGTCGGGAAAGATGGCTTAACCATCTTCAGCCAAACATTAAGAAGGACTCATGGACCGCGGAGGAAGACCTGATTTTGATCGAAGCCCATCAGGAATTTGGAAACAAATGGTCAGAGATTGCAAAGAGATTGCCTGGTAGGAGTGAGAACACAGTCAAGAACCATTGGAACACCACCAAGCGGAGCCGAAACTGCAAGAGGCACAAGAAGAACAAGAACGTAACTTATGAAGCGTCACTGCTCCATACCTATGTCAAAAGGGTCACTGCTACTGAAGAAGCTTCAGAAAGGCTCAAGAAAACCCCAAGCCAGAAGAATAAGGTGATGACATGCAATTGTGATGAGCTAGCTCTTTTGTTGAGCTGTGATAACTTCTCACATGCTGTGTTCAATGGAAACTATGTGCCGATGCAAGTCAATAATAATGATGGTGGTGGTGGAAACATTGGCTACGGTGCAATGGCAAAGGATTTGAATCATTTGATGGTGGAGAGGGAAATGAATATCGGACATGTGTAA 1194 0.4179 MEFDPCFQGSQQLQNPCFKPQPQTTYPSQNSILIPPSPLPILFQPHNTFHHFQEQTMTMSSHSIASMKEGPSSTNIPIPLYGKMPSLSLSDGSLLRGSFANIHSQLPAMLPPNHNNKDVFHDNHHKGKVIWDFSQKTMVHPFEGSSSNSPSPLFNEYELVMSDYHWDTDQRKKNVKGKKDTNNNNIIKGQWTPEEDSALMELVNQFGPKKWSQIAKSLSSRIGKQCRERWLNHLQPNIKKDSWTAEEDLILIEAHQEFGNKWSEIAKRLPGRSENTVKNHWNTTKRSRNCKRHKKNKNVTYEASLLHTYVKRVTATEEASERLKKTPSQKNKVMTCNCDELALLLSCDNFSHAVFNGNYVPMQVNNNDGGGGNIGYGAMAKDLNHLMVEREMNIGHV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01033 397 PANTHER MYB DOMAIN PROTEIN 100-RELATED 148 324 - -
Cca11g01033 397 CDD SANT 242 285 IPR001005 -
Cca11g01033 397 Gene3D - 241 295 - -
Cca11g01033 397 Gene3D - 187 239 - -
Cca11g01033 397 ProSiteProfiles Myb-like domain profile. 235 285 IPR001005 -
Cca11g01033 397 SMART sant 239 287 IPR001005 -
Cca11g01033 397 SMART sant 187 236 IPR001005 -
Cca11g01033 397 Pfam Myb-like DNA-binding domain 188 234 IPR001005 -
Cca11g01033 397 Pfam Myb-like DNA-binding domain 240 283 IPR001005 -
Cca11g01033 397 CDD SANT 191 234 IPR001005 -
Cca11g01033 397 ProSiteProfiles Myb-like domain profile. 183 234 IPR001005 -
Cca11g01033 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 289 IPR017930 -
Cca11g01033 397 PANTHER MYB PROTEIN-RELATED 148 324 - -
Cca11g01033 397 SUPERFAMILY Homeodomain-like 185 281 IPR009057 -
Cca11g01033 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 238 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01033 Cca-Chr11 24364314 24369631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01033 179 313 MYB Transcription Factor Family AT4G18770 57.037 1.06e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g01033 Myb_DNA-binding 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01033 K09422 - ccaj:109801641 796.964