Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01024 ATGGGTGTGTCCCAAAAATGGTTCAGAATTGTTCGAGGCAGATTCCTCCGATCATCCAACAAAAACATCATCATTCTCCCTCGCAGCAATGAAAGCGAAGAAGCCATACTTAGCAACGAAGACTTCACTTTTCCAACACCAATTTCTTTGGTCACTGAAGAAGATGTTGCGGCAATTAAGATCCAAGCTTATTTCAGGGGACATCTAGCGAGACGAGCTTATAGGGCTTTAAAAAGCCTAGTGAAGCTTCAAGCATTGGTTCGTGGGGTGTGGGTGAGGAAACAATCACGTATAGCAATGCAATGTATGCACGCACTTGTAAGATTGCAAGTAAGGGTTCGTGCAAGGCAGCTACTAGGTAGCTTTGATAAGGAACATGTATAA 384 0.4349 MGVSQKWFRIVRGRFLRSSNKNIIILPRSNESEEAILSNEDFTFPTPISLVTEEDVAAIKIQAYFRGHLARRAYRALKSLVKLQALVRGVWVRKQSRIAMQCMHALVRLQVRVRARQLLGSFDKEHV 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01024 127 ProSiteProfiles IQ motif profile. 78 105 IPR000048 GO:0005515
Cca11g01024 127 Pfam IQ calmodulin-binding motif 78 95 IPR000048 GO:0005515
Cca11g01024 127 Pfam IQ calmodulin-binding motif 57 75 IPR000048 GO:0005515
Cca11g01024 127 PANTHER OS04G0561100 PROTEIN 4 120 - -
Cca11g01024 127 SMART iq_5 53 75 IPR000048 GO:0005515
Cca11g01024 127 SMART iq_5 76 97 IPR000048 GO:0005515
Cca11g01024 127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 98 IPR027417 -
Cca11g01024 127 PANTHER IQ-DOMAIN 5-RELATED 4 120 - -
Cca11g01024 127 ProSiteProfiles IQ motif profile. 54 82 IPR000048 GO:0005515
Cca11g01024 127 Gene3D - 53 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01024 Cca-Chr11 23877149 23877621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01024 1 120 IQD Protein Family AT3G51380 55.000 1.75e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01024 - - ccaj:109793784 240.35