Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01020 ATGGCTGATTCCCCTCTCGCAAGGAATTCAAGGTCCCCACTGTGGAAAGCTCAgtctagatcgaggtctaggtcgagatctaggtcaaggtctaggtctaggCCGAGACAAAGGCCAAGGTCCCGTTCTAGGAGTCGTGGCAGGTCAAGGTCTCGAAGTCATGGAAGGTCTGAGCCTTCAAATCCTGGTGACACACTTTATGTAACTGGTCTGTCTTCAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGCACCCGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAAACTGTTGATGATGCAGAGCGCTGTATCAAGTATCTCAATCAATCAGTCTTAGAGGGTCGTTACATCACTGTTGAACGGGGATCAAAGATGATCAGTTCATACATTTCAACTTTAGTGAAACTGCTTGATCAATGGCAAGCTTAA 483 0.4161 MADSPLARNSRSPLWKAQSRSRSRSRSRSRSRSRPRQRPRSRSRSRGRSRSRSHGRSEPSNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMETVDDAERCIKYLNQSVLEGRYITVERGSKMISSYISTLVKLLDQWQA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01020 160 Gene3D - 8 143 IPR012677 -
Cca11g01020 160 SMART rrm1_1 65 138 IPR000504 GO:0003723
Cca11g01020 160 MobiDBLite consensus disorder prediction 21 51 - -
Cca11g01020 160 MobiDBLite consensus disorder prediction 1 68 - -
Cca11g01020 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 135 IPR000504 GO:0003723
Cca11g01020 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Cca11g01020 160 PANTHER RNA RECOGNITION MOTIF 2 141 - -
Cca11g01020 160 CDD RRM_RBMX_like 63 142 - -
Cca11g01020 160 SUPERFAMILY RNA-binding domain, RBD 21 139 IPR035979 GO:0003676
Cca11g01020 160 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01020 Cca-Chr11 23627173 23630044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01020 61 138 Eukaryotic Initiation Factors Gene Family AT3G11400 34.615 3.52e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01020 K12897 - gmx:100499944 185.652