Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01018 ATGGCTAGTTCAGTTGGAGGGAACTTAAGCTCGAGCGCGGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAGAACCCCATCGTCTTCTTCAATGTCACCATCGGTAACATTCCCGCCGGTCGAATCAAGATGGAGCTCTTCGCCAACATTGCGCCCAGAATTGCCGAGAATTTCAGGCAGCTCTGCACTGGGGAGTACAGGAAAGTAGGACTGCCTGTTGGTTACAAGGGTTGTCAATTTCATAGAGTTATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTAAAGggtgatggtagtagatgtgatggaaatctaatccccaaggatccctttggaagagataagaccaagaggggtgaaggttga 372 0.3844 MASSVGGNLSSSAGVEWHVRPPNPKNPIVFFNVTIGNIPAGRIKMELFANIAPRIAENFRQLCTGEYRKVGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSRCDGNLIPKDPFGRDKTKRGEG 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01018 123 MobiDBLite consensus disorder prediction 109 123 - -
Cca11g01018 123 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 76 93 IPR020892 GO:0003755|GO:0006457
Cca11g01018 123 Gene3D - 16 122 IPR029000 -
Cca11g01018 123 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 32 100 IPR002130 GO:0000413|GO:0003755
Cca11g01018 123 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Cca11g01018 123 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 93 IPR002130 GO:0000413|GO:0003755
Cca11g01018 123 SUPERFAMILY Cyclophilin-like 19 119 IPR029000 -
Cca11g01018 123 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 23 113 - -
Cca11g01018 123 MobiDBLite consensus disorder prediction 100 123 - -
Cca11g01018 123 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 23 113 - -
Cca11g01018 123 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 30 123 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01018 Cca-Chr11 23399562 23401544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01018 41 94 U-box Gene Family AT5G67530 46.296 1.64e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01018 K09567 - gmx:100813835 191.045