Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01016 ATGCAGACCACTAGAATGGGCCAATGGTTATGTCTTGTGATATGTGTAGTACTATTACTGAAGGCAGAAGGGGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCACTTCCATAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGGGAGGAGGATGGTGCAACAATGCCACTTCATGCCTTGACCGAAGGGATACTCGTTTAGGTTCATCTAAGAAAATGGCCAAGGAACTTTCCTTTTCTGGATTTTTTAGTAATGGTCGAAAGTTCAATCCAGATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGATCATCATTTACTGGTGATGTTGAAGCTGTTGATCCAGCAACCAATTTGCACTTCAGAGGAGCAAGAATTTTTGCTGCTGTGGTTGAGGATTTACTGGCAAAAGGAATGAAAAACGCTCAAAATGCAATTATCTCTGGATGTTCAGCTGGAGGATTGGCTGCTATTTTAAATTGTGATCGATTCAAAAGTCTTTTACCCAAAACAACTAAAGTAAAATGCCTTGCAGATGCTGGTTATTTTATCAACGTAAAGGATGTCTCCGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATGGCTCAGCAAAGAATCTGCCTTCATCTTGCACTTCAAGACTCAGACCAGGGCTGTGCTTTTTCCCACAAAACGTGGTATCACAAATCAGCACCCCAATCTTTTTTGTAAATGCAGCCTATGACTCATGGCAGGTCAGATTATTATCTTTCTCAAGAAACATCATTTTACTTTTTGGAATGGTGTTCCTTCGGAATATTTTGGTCCTACTTATAACTGATACTGTGCTTATATTCATTGATCAATTGGAGGGCTTGTTTATAAGGTTAAGCAACATTGATTGGGTTATAGAAGACATTAAACTATTCAAGAAAATTCTAGTGTTGCTTCTGAAATTCATCTTTTCACAAAAATTCATATTGGGATTTATACAGAACAACATGATACACTTGCATAATAAAATTTAA 1092 0.3883 MQTTRMGQWLCLVICVVLLLKAEGVPVGITFVENAVAKGAVCLDGSPPAYHFHKGSGAGINNWIVHFEGGGWCNNATSCLDRRDTRLGSSKKMAKELSFSGFFSNGRKFNPDFYDWNRIKVRYCDGSSFTGDVEAVDPATNLHFRGARIFAAVVEDLLAKGMKNAQNAIISGCSAGGLAAILNCDRFKSLLPKTTKVKCLADAGYFINVKDVSGAQRIEEFYSQVVQTHGSAKNLPSSCTSRLRPGLCFFPQNVVSQISTPIFFVNAAYDSWQVRLLSFSRNIILLFGMVFLRNILVLLITDTVLIFIDQLEGLFIRLSNIDWVIEDIKLFKKILVLLLKFIFSQKFILGFIQNNMIHLHNKI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01016 363 Pfam Pectinacetylesterase 21 276 IPR004963 GO:0016787
Cca11g01016 363 PANTHER NOTUM-RELATED 3 275 IPR004963 GO:0016787
Cca11g01016 363 PANTHER PECTIN ACETYLESTERASE 3 275 - -
Cca11g01016 363 SUPERFAMILY alpha/beta-Hydrolases 140 277 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01016 Cca-Chr11 23375253 23382055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01016 5 275 Carbohydrate Esterase AT4G19420 64.945 9.78e-141 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01016 K19882 - gmx:100781246 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01016 11 23375253 23382055 Cca11g01016 11 23375253 23382055 ECH