Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01014 ATGGGTTCCAATGGTAGCAAAGCCACTTCCTCTTGCAGTTCTTCGTCGTCTTCTTCGGGGAGTTTAAGGAAGGGTCGATCTAAGGGCCTTAGAGTTTTTCAATCTTATTGTCTTGGAACAACTTCTGGGTCTCACGATAGTAAAAATGACGACCAGGTTTGTGATCATAATAAAGCCAATGGCACTGCTGTTACATACACTGATGGCAATGGAACAGACTCAGTTGAGGTGAAAACAGAGTCATTTAGAAAGGTTAATGCTGGTGAAATGACTTTTATGCCTTCTAACGTTGACCTTCATGAATGGGGTGAAACAAGCATCCATAACACATCCAGAACTGGTAGCAGCTCAATTCATTCATCGTCAACTCATTCCTTGAACCCTACTAGTCATTTCCTTTCCCGGTTTTGCCTCATTCCTGGTAATGTAAGCTTCGGACTTAGCAGAACCACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTGTCTTCTGCAAGTCTCTCAATATTTGGCAATGAAGATGAGCATAATCTCCATCGTGGATCTCTTGGAAGTTTGATTAACAGAAGTGAAACCCAACAATGTAGTGACTTGCTTCCTGCATCATTTTTCAATCAAATACATGCACAATGTCGCGAACATGCTTCTAATAATTTGAGGTCAAATGCCCCAACATCAGCTGTACCTGGAAACCTGCAGAGCAGTTCCACAGGTGGAATTTGTACAAGTGAAGGTCCAGGTGTGAACTTATTTTCTCCAAGAACTCAAATAGACACAGAAAATGTTGACACTAGACATATTGATCAACAAAATGGAGCTAGAGAATCAGTTGAACAGAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCATGACAGAGTTCTTCGTCCATCAACATTATCTGAACTTCGCCCTCTGCAACAAGAGAGGGAGCTGGTTGATGTTAACCTTCCTAGACAGGATATTGAAAGACAAGCAGTGGAGGGAGATTCACGAGTGTCACCATCTAATCATAGTGCAGTGAATTCTTCTTCTATATCTGGTTATCCTCCATCTAGTATGTCTAACTCCTTGTTTGGCATCCAAGACTATGAGGTTGAAGCTTCACGATTGAGAGATGGTAGGTATCAGAATCTGCTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCACAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGATTTGAAAATATTTCTGGACATGATAGATCATGTATTTTGTCTGGTCAGAATAGAAATGGTCGTTGTACATGCCGAATCAATAATGGAGACACTTCAAATGATGATACCGGTGCTAGAGCTAGCATATCAAGAATTGTGATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCTCGCCCTTCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTGGAGTCCTTGCCTGTCAAGTTATATGAGAAGTTGCATAAGCATCAAGAGGATGGTGCACAATGCTATATATGCCTTGTGGAGTACGAGGATGGAGACAACATGCGAGTGTTGCCGTGCCATCATGAATTCCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCACTTTGTCGGGGGGACATATGCATATCTGATTCAACTCCCACACAGAACTCCAGTGGCTAG 1716 0.4272 MGSNGSKATSSCSSSSSSSGSLRKGRSKGLRVFQSYCLGTTSGSHDSKNDDQVCDHNKANGTAVTYTDGNGTDSVEVKTESFRKVNAGEMTFMPSNVDLHEWGETSIHNTSRTGSSSIHSSSTHSLNPTSHFLSRFCLIPGNVSFGLSRTTSLGSSRPCPVSSASLSIFGNEDEHNLHRGSLGSLINRSETQQCSDLLPASFFNQIHAQCREHASNNLRSNAPTSAVPGNLQSSSTGGICTSEGPGVNLFSPRTQIDTENVDTRHIDQQNGARESVEQNVRFSRTLSVGRLHDRVLRPSTLSELRPLQQERELVDVNLPRQDIERQAVEGDSRVSPSNHSAVNSSSISGYPPSSMSNSLFGIQDYEVEASRLRDGRYQNLLEHRSNFLERRRRIRSQVRALQRLGSRFENISGHDRSCILSGQNRNGRCTCRINNGDTSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYEKLHKHQEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPTQNSSG 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01014 571 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g01014 571 MobiDBLite consensus disorder prediction 331 352 - -
Cca11g01014 571 CDD RING-H2_PA-TM-RING 512 555 - -
Cca11g01014 571 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Cca11g01014 571 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 570 - -
Cca11g01014 571 SMART ring_2 513 554 IPR001841 -
Cca11g01014 571 MobiDBLite consensus disorder prediction 1 27 - -
Cca11g01014 571 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Cca11g01014 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 559 IPR013083 -
Cca11g01014 571 SUPERFAMILY RING/U-box 491 562 - -
Cca11g01014 571 Pfam Ring finger domain 512 555 IPR001841 -
Cca11g01014 571 MobiDBLite consensus disorder prediction 326 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01014 Cca-Chr11 23338659 23344982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01014 244 568 C3H Transcription Factor Family AT5G45290 60.299 1.74e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01014 - - gmx:100800896 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01014 11 23338659 23344982 Cca11g01014 11 23338659 23344982 ECH